Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS33010

Experiment: 2-Deoxy-D-ribonic lithium salt (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS33005 and BPHYT_RS33010 are separated by 72 nucleotidesBPHYT_RS33010 and BPHYT_RS33015 are separated by 117 nucleotidesBPHYT_RS33015 and BPHYT_RS33020 are separated by 3 nucleotides BPHYT_RS33005: BPHYT_RS33005 - AraC family transcriptional regulator, at 2,983,798 to 2,984,772 _RS33005 BPHYT_RS33010: BPHYT_RS33010 - hypothetical protein, at 2,984,845 to 2,985,345 _RS33010 BPHYT_RS33015: BPHYT_RS33015 - hypothetical protein, at 2,985,463 to 2,985,960 _RS33015 BPHYT_RS33020: BPHYT_RS33020 - hypothetical protein, at 2,985,964 to 2,986,740 _RS33020 Position (kb) 2984 2985 2986Strain fitness (log2 ratio) -1 0 1 2at 2984.058 kb on + strand, within BPHYT_RS33005at 2984.922 kb on - strand, within BPHYT_RS33010at 2984.978 kb on - strand, within BPHYT_RS33010at 2985.353 kb on - strandat 2985.422 kb on + strandat 2985.697 kb on + strand, within BPHYT_RS33015at 2986.236 kb on - strand, within BPHYT_RS33020

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxy-D-ribonic lithium salt (C)
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2,984,058 + BPHYT_RS33005 0.27 -1.7
2,984,922 - BPHYT_RS33010 0.15 -0.6
2,984,978 - BPHYT_RS33010 0.27 +0.6
2,985,353 - -0.0
2,985,422 + -1.2
2,985,697 + BPHYT_RS33015 0.47 +0.8
2,986,236 - BPHYT_RS33020 0.35 +2.7

Or see this region's nucleotide sequence