Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS32295

Experiment: 2-Deoxy-D-ribonic lithium salt (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS32285 and BPHYT_RS32290 are separated by 106 nucleotidesBPHYT_RS32290 and BPHYT_RS32295 are separated by 86 nucleotidesBPHYT_RS32295 and BPHYT_RS32300 are separated by 6 nucleotides BPHYT_RS32285: BPHYT_RS32285 - aromatic amino acid aminotransferase, at 2,813,224 to 2,814,414 _RS32285 BPHYT_RS32290: BPHYT_RS32290 - hypothetical protein, at 2,814,521 to 2,815,210 _RS32290 BPHYT_RS32295: BPHYT_RS32295 - ATP-binding protein, at 2,815,297 to 2,816,085 _RS32295 BPHYT_RS32300: BPHYT_RS32300 - integrase, at 2,816,092 to 2,817,609 _RS32300 Position (kb) 2815 2816 2817Strain fitness (log2 ratio) -2 -1 0 1at 2814.308 kb on + strandat 2814.535 kb on - strandat 2814.846 kb on + strand, within BPHYT_RS32290at 2814.857 kb on + strand, within BPHYT_RS32290at 2815.094 kb on + strand, within BPHYT_RS32290

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxy-D-ribonic lithium salt (C)
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2,814,308 + +1.5
2,814,535 - -0.4
2,814,846 + BPHYT_RS32290 0.47 -2.4
2,814,857 + BPHYT_RS32290 0.49 -2.7
2,815,094 + BPHYT_RS32290 0.83 -0.9

Or see this region's nucleotide sequence