Experiment: 2-Deoxy-D-ribonic lithium salt (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS30580 and BPHYT_RS30585 are separated by 5 nucleotides BPHYT_RS30585 and BPHYT_RS30590 are separated by 114 nucleotides BPHYT_RS30590 and BPHYT_RS30595 are separated by 156 nucleotides BPHYT_RS30595 and BPHYT_RS30600 are separated by 69 nucleotides
BPHYT_RS30580: BPHYT_RS30580 - cupin, at 2,418,556 to 2,419,065
_RS30580
BPHYT_RS30585: BPHYT_RS30585 - dTDP-glucose 4,6-dehydratase, at 2,419,071 to 2,419,808
_RS30585
BPHYT_RS30590: BPHYT_RS30590 - transcriptional regulator, at 2,419,923 to 2,421,494
_RS30590
BPHYT_RS30595: BPHYT_RS30595 - membrane protein, at 2,421,651 to 2,422,112
_RS30595
BPHYT_RS30600: BPHYT_RS30600 - alpha/beta hydrolase, at 2,422,182 to 2,423,213
_RS30600
Position (kb)
2419
2420
2421
2422 Strain fitness (log2 ratio)
-2
-1
0
1 at 2419.273 kb on + strand, within BPHYT_RS30585 at 2419.274 kb on - strand, within BPHYT_RS30585 at 2419.730 kb on - strand, within BPHYT_RS30585 at 2419.853 kb on - strand at 2419.853 kb on - strand at 2419.872 kb on - strand at 2420.487 kb on + strand, within BPHYT_RS30590 at 2420.488 kb on - strand, within BPHYT_RS30590 at 2420.928 kb on + strand, within BPHYT_RS30590 at 2421.107 kb on - strand, within BPHYT_RS30590 at 2422.244 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Deoxy-D-ribonic lithium salt (C) remove 2,419,273 + BPHYT_RS30585 0.27 +0.2 2,419,274 - BPHYT_RS30585 0.28 -0.3 2,419,730 - BPHYT_RS30585 0.89 +1.7 2,419,853 - -0.6 2,419,853 - +0.5 2,419,872 - +0.5 2,420,487 + BPHYT_RS30590 0.36 +1.1 2,420,488 - BPHYT_RS30590 0.36 +1.6 2,420,928 + BPHYT_RS30590 0.64 -1.8 2,421,107 - BPHYT_RS30590 0.75 -0.6 2,422,244 + +1.1
Or see this region's nucleotide sequence