Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS30485

Experiment: 2-Deoxy-D-ribonic lithium salt (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS30480 and BPHYT_RS30485 are separated by 101 nucleotidesBPHYT_RS30485 and BPHYT_RS30490 are separated by 65 nucleotidesBPHYT_RS30490 and BPHYT_RS30495 are separated by 4 nucleotides BPHYT_RS30480: BPHYT_RS30480 - LysR family transcriptional regulator, at 2,397,996 to 2,398,967 _RS30480 BPHYT_RS30485: BPHYT_RS30485 - ABC transporter ATP-binding protein, at 2,399,069 to 2,400,151 _RS30485 BPHYT_RS30490: BPHYT_RS30490 - 2-haloalkanoic acid dehalogenase, at 2,400,217 to 2,400,930 _RS30490 BPHYT_RS30495: BPHYT_RS30495 - oxidoreductase, at 2,400,935 to 2,402,272 _RS30495 Position (kb) 2399 2400 2401Strain fitness (log2 ratio) -1 0 1 2at 2398.867 kb on + strand, within BPHYT_RS30480at 2398.867 kb on + strand, within BPHYT_RS30480at 2398.868 kb on - strand, within BPHYT_RS30480at 2398.868 kb on - strand, within BPHYT_RS30480at 2398.868 kb on - strand, within BPHYT_RS30480at 2398.869 kb on + strand, within BPHYT_RS30480at 2399.027 kb on - strandat 2399.648 kb on + strand, within BPHYT_RS30485at 2400.358 kb on + strand, within BPHYT_RS30490

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxy-D-ribonic lithium salt (C)
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2,398,867 + BPHYT_RS30480 0.90 -0.1
2,398,867 + BPHYT_RS30480 0.90 +2.7
2,398,868 - BPHYT_RS30480 0.90 -0.5
2,398,868 - BPHYT_RS30480 0.90 -1.1
2,398,868 - BPHYT_RS30480 0.90 +1.3
2,398,869 + BPHYT_RS30480 0.90 -0.4
2,399,027 - +1.5
2,399,648 + BPHYT_RS30485 0.53 +1.9
2,400,358 + BPHYT_RS30490 0.20 +0.7

Or see this region's nucleotide sequence