Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS29900

Experiment: 2-Deoxy-D-ribonic lithium salt (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS29890 and BPHYT_RS29895 are separated by 96 nucleotidesBPHYT_RS29895 and BPHYT_RS29900 are separated by 62 nucleotidesBPHYT_RS29900 and BPHYT_RS29905 are separated by 62 nucleotidesBPHYT_RS29905 and BPHYT_RS29910 are separated by 28 nucleotides BPHYT_RS29890: BPHYT_RS29890 - LysR family transcriptional regulator, at 2,259,392 to 2,260,339 _RS29890 BPHYT_RS29895: BPHYT_RS29895 - hypothetical protein, at 2,260,436 to 2,260,741 _RS29895 BPHYT_RS29900: BPHYT_RS29900 - NADP transhydrogenase subunit beta, at 2,260,804 to 2,261,715 _RS29900 BPHYT_RS29905: BPHYT_RS29905 - 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase, at 2,261,778 to 2,262,596 _RS29905 BPHYT_RS29910: BPHYT_RS29910 - formyl-CoA transferase, at 2,262,625 to 2,263,872 _RS29910 Position (kb) 2260 2261 2262Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2259.896 kb on + strand, within BPHYT_RS29890at 2259.896 kb on + strand, within BPHYT_RS29890at 2260.209 kb on - strand, within BPHYT_RS29890at 2260.390 kb on + strandat 2260.740 kb on - strandat 2261.694 kb on + strandat 2261.702 kb on + strandat 2261.703 kb on - strandat 2262.278 kb on - strand, within BPHYT_RS29905at 2262.293 kb on + strand, within BPHYT_RS29905at 2262.518 kb on - strandat 2262.699 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxy-D-ribonic lithium salt (C)
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2,259,896 + BPHYT_RS29890 0.53 +3.2
2,259,896 + BPHYT_RS29890 0.53 +0.2
2,260,209 - BPHYT_RS29890 0.86 +2.3
2,260,390 + -0.2
2,260,740 - +0.7
2,261,694 + -0.4
2,261,702 + +0.4
2,261,703 - -0.2
2,262,278 - BPHYT_RS29905 0.61 +0.5
2,262,293 + BPHYT_RS29905 0.63 -0.1
2,262,518 - -2.1
2,262,699 + -0.3

Or see this region's nucleotide sequence