Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS28510

Experiment: 2-Deoxy-D-ribonic lithium salt (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS28500 and BPHYT_RS28505 are separated by 16 nucleotidesBPHYT_RS28505 and BPHYT_RS28510 are separated by 69 nucleotidesBPHYT_RS28510 and BPHYT_RS28515 overlap by 14 nucleotides BPHYT_RS28500: BPHYT_RS28500 - LysR family transcriptional regulator, at 1,948,947 to 1,949,903 _RS28500 BPHYT_RS28505: BPHYT_RS28505 - 5-deoxyglucuronate isomerase, at 1,949,920 to 1,950,750 _RS28505 BPHYT_RS28510: BPHYT_RS28510 - dioxygenase, at 1,950,820 to 1,952,298 _RS28510 BPHYT_RS28515: BPHYT_RS28515 - mannonate dehydratase, at 1,952,285 to 1,953,337 _RS28515 Position (kb) 1950 1951 1952 1953Strain fitness (log2 ratio) -2 -1 0 1 2at 1950.033 kb on - strand, within BPHYT_RS28505at 1950.041 kb on + strand, within BPHYT_RS28505at 1950.186 kb on - strand, within BPHYT_RS28505at 1951.283 kb on - strand, within BPHYT_RS28510at 1951.377 kb on - strand, within BPHYT_RS28510at 1951.427 kb on + strand, within BPHYT_RS28510at 1951.640 kb on - strand, within BPHYT_RS28510at 1951.893 kb on - strand, within BPHYT_RS28510at 1952.154 kb on - strandat 1953.185 kb on + strand, within BPHYT_RS28515at 1953.185 kb on + strand, within BPHYT_RS28515at 1953.186 kb on - strand, within BPHYT_RS28515at 1953.247 kb on - strandat 1953.291 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxy-D-ribonic lithium salt (C)
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1,950,033 - BPHYT_RS28505 0.14 -2.3
1,950,041 + BPHYT_RS28505 0.15 +0.3
1,950,186 - BPHYT_RS28505 0.32 -0.9
1,951,283 - BPHYT_RS28510 0.31 +0.3
1,951,377 - BPHYT_RS28510 0.38 +1.5
1,951,427 + BPHYT_RS28510 0.41 +0.5
1,951,640 - BPHYT_RS28510 0.55 -0.3
1,951,893 - BPHYT_RS28510 0.73 +0.5
1,952,154 - +0.6
1,953,185 + BPHYT_RS28515 0.85 -0.8
1,953,185 + BPHYT_RS28515 0.85 +2.0
1,953,186 - BPHYT_RS28515 0.86 -1.5
1,953,247 - +0.1
1,953,291 + -2.1

Or see this region's nucleotide sequence