Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS22925

Experiment: 2-Deoxy-D-ribonic lithium salt (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS22920 and BPHYT_RS22925 are separated by 27 nucleotidesBPHYT_RS22925 and BPHYT_RS22930 are separated by 43 nucleotides BPHYT_RS22920: BPHYT_RS22920 - pilus assembly protein CpaF, at 700,975 to 702,357 _RS22920 BPHYT_RS22925: BPHYT_RS22925 - pilus assembly protein TadB, at 702,385 to 703,362 _RS22925 BPHYT_RS22930: BPHYT_RS22930 - type II secretion system protein, at 703,406 to 704,362 _RS22930 Position (kb) 702 703 704Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 702.251 kb on - strandat 702.688 kb on + strand, within BPHYT_RS22925at 702.689 kb on - strand, within BPHYT_RS22925at 702.689 kb on - strand, within BPHYT_RS22925at 702.930 kb on - strand, within BPHYT_RS22925at 703.835 kb on + strand, within BPHYT_RS22930at 704.175 kb on - strand, within BPHYT_RS22930

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxy-D-ribonic lithium salt (C)
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702,251 - -4.7
702,688 + BPHYT_RS22925 0.31 -0.5
702,689 - BPHYT_RS22925 0.31 +1.4
702,689 - BPHYT_RS22925 0.31 -0.5
702,930 - BPHYT_RS22925 0.56 +0.3
703,835 + BPHYT_RS22930 0.45 -0.3
704,175 - BPHYT_RS22930 0.80 +0.5

Or see this region's nucleotide sequence