Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS21955

Experiment: 2-Deoxy-D-ribonic lithium salt (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS21950 and BPHYT_RS21955 are separated by 70 nucleotidesBPHYT_RS21955 and BPHYT_RS21960 are separated by 196 nucleotides BPHYT_RS21950: BPHYT_RS21950 - RND transporter, at 480,973 to 482,406 _RS21950 BPHYT_RS21955: BPHYT_RS21955 - acetyl-CoA acetyltransferase, at 482,477 to 483,664 _RS21955 BPHYT_RS21960: BPHYT_RS21960 - nucleoside transporter, at 483,861 to 485,138 _RS21960 Position (kb) 482 483 484Strain fitness (log2 ratio) -1 0 1at 481.952 kb on - strand, within BPHYT_RS21950at 482.225 kb on - strand, within BPHYT_RS21950at 482.341 kb on + strandat 482.497 kb on - strandat 482.852 kb on + strand, within BPHYT_RS21955at 483.318 kb on - strand, within BPHYT_RS21955at 483.704 kb on + strandat 483.705 kb on - strandat 483.705 kb on - strandat 483.788 kb on + strandat 483.791 kb on - strandat 483.899 kb on - strandat 483.917 kb on + strandat 484.210 kb on - strand, within BPHYT_RS21960at 484.210 kb on - strand, within BPHYT_RS21960at 484.212 kb on + strand, within BPHYT_RS21960at 484.593 kb on - strand, within BPHYT_RS21960

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxy-D-ribonic lithium salt (C)
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481,952 - BPHYT_RS21950 0.68 +0.7
482,225 - BPHYT_RS21950 0.87 -0.3
482,341 + +0.5
482,497 - -1.3
482,852 + BPHYT_RS21955 0.32 -0.0
483,318 - BPHYT_RS21955 0.71 -0.4
483,704 + +0.3
483,705 - -0.6
483,705 - +0.1
483,788 + -0.8
483,791 - -1.0
483,899 - -0.3
483,917 + -0.6
484,210 - BPHYT_RS21960 0.27 -0.8
484,210 - BPHYT_RS21960 0.27 +0.3
484,212 + BPHYT_RS21960 0.27 +0.5
484,593 - BPHYT_RS21960 0.57 -1.6

Or see this region's nucleotide sequence