Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS20785

Experiment: 2-Deoxy-D-ribonic lithium salt (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBPHYT_RS20780 and BPHYT_RS20785 are separated by 213 nucleotidesBPHYT_RS20785 and BPHYT_RS20790 are separated by 130 nucleotides BPHYT_RS20780: BPHYT_RS20780 - acyl-CoA dehydrogenase, at 223,167 to 224,312 _RS20780 BPHYT_RS20785: BPHYT_RS20785 - CoA-transferase, at 224,526 to 226,013 _RS20785 BPHYT_RS20790: BPHYT_RS20790 - TetR family transcriptional regulator, at 226,144 to 226,794 _RS20790 Position (kb) 224 225 226 227Strain fitness (log2 ratio) -3 -2 -1 0 1at 223.954 kb on + strand, within BPHYT_RS20780at 223.993 kb on + strand, within BPHYT_RS20780at 224.194 kb on + strand, within BPHYT_RS20780at 225.105 kb on + strand, within BPHYT_RS20785at 225.180 kb on + strand, within BPHYT_RS20785at 225.180 kb on + strand, within BPHYT_RS20785at 225.181 kb on - strand, within BPHYT_RS20785at 225.181 kb on - strand, within BPHYT_RS20785at 225.830 kb on + strand, within BPHYT_RS20785at 225.876 kb on + strandat 225.876 kb on + strandat 225.876 kb on + strandat 225.974 kb on + strandat 225.975 kb on - strandat 226.571 kb on + strand, within BPHYT_RS20790at 226.625 kb on + strand, within BPHYT_RS20790at 226.897 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxy-D-ribonic lithium salt (C)
remove
223,954 + BPHYT_RS20780 0.69 +0.2
223,993 + BPHYT_RS20780 0.72 +0.0
224,194 + BPHYT_RS20780 0.90 +0.2
225,105 + BPHYT_RS20785 0.39 +0.2
225,180 + BPHYT_RS20785 0.44 +0.5
225,180 + BPHYT_RS20785 0.44 -0.6
225,181 - BPHYT_RS20785 0.44 -1.5
225,181 - BPHYT_RS20785 0.44 +1.7
225,830 + BPHYT_RS20785 0.88 -0.0
225,876 + -0.5
225,876 + -0.2
225,876 + +1.2
225,974 + -0.2
225,975 - -0.2
226,571 + BPHYT_RS20790 0.66 -1.3
226,625 + BPHYT_RS20790 0.74 -3.6
226,897 - +0.7

Or see this region's nucleotide sequence