Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS17360

Experiment: 2-Deoxy-D-ribonic lithium salt (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS17350 and BPHYT_RS17355 are separated by 2 nucleotidesBPHYT_RS17355 and BPHYT_RS17360 are separated by 150 nucleotidesBPHYT_RS17360 and BPHYT_RS17365 are separated by 177 nucleotides BPHYT_RS17350: BPHYT_RS17350 - enoyl-CoA hydratase, at 3,933,785 to 3,934,576 _RS17350 BPHYT_RS17355: BPHYT_RS17355 - phenylacetic acid degradation protein, at 3,934,579 to 3,935,040 _RS17355 BPHYT_RS17360: BPHYT_RS17360 - phenylacetate-CoA ligase, at 3,935,191 to 3,936,495 _RS17360 BPHYT_RS17365: BPHYT_RS17365 - transglycosylase, at 3,936,673 to 3,937,797 _RS17365 Position (kb) 3935 3936 3937Strain fitness (log2 ratio) -2 -1 0 1 2at 3934.517 kb on + strandat 3934.652 kb on - strand, within BPHYT_RS17355at 3934.700 kb on + strand, within BPHYT_RS17355at 3934.825 kb on + strand, within BPHYT_RS17355at 3934.825 kb on + strand, within BPHYT_RS17355at 3934.825 kb on + strand, within BPHYT_RS17355at 3934.825 kb on + strand, within BPHYT_RS17355at 3934.826 kb on - strand, within BPHYT_RS17355at 3934.826 kb on - strand, within BPHYT_RS17355at 3934.826 kb on - strand, within BPHYT_RS17355at 3934.826 kb on - strand, within BPHYT_RS17355at 3934.826 kb on - strand, within BPHYT_RS17355at 3934.892 kb on + strand, within BPHYT_RS17355at 3934.893 kb on - strand, within BPHYT_RS17355at 3934.942 kb on + strand, within BPHYT_RS17355at 3934.942 kb on + strand, within BPHYT_RS17355at 3934.943 kb on - strand, within BPHYT_RS17355at 3934.943 kb on - strand, within BPHYT_RS17355at 3935.151 kb on + strandat 3935.151 kb on + strandat 3935.151 kb on + strandat 3935.151 kb on + strandat 3935.152 kb on - strandat 3935.152 kb on - strandat 3935.152 kb on - strandat 3935.152 kb on - strandat 3935.152 kb on - strandat 3935.268 kb on + strandat 3935.269 kb on - strandat 3935.269 kb on - strandat 3935.291 kb on - strandat 3935.413 kb on + strand, within BPHYT_RS17360at 3935.590 kb on - strand, within BPHYT_RS17360at 3935.590 kb on - strand, within BPHYT_RS17360at 3935.596 kb on + strand, within BPHYT_RS17360at 3935.602 kb on + strand, within BPHYT_RS17360at 3935.635 kb on + strand, within BPHYT_RS17360at 3935.749 kb on + strand, within BPHYT_RS17360at 3935.749 kb on + strand, within BPHYT_RS17360at 3935.749 kb on + strand, within BPHYT_RS17360at 3935.749 kb on + strand, within BPHYT_RS17360at 3935.750 kb on - strand, within BPHYT_RS17360at 3935.750 kb on - strand, within BPHYT_RS17360at 3935.899 kb on + strand, within BPHYT_RS17360at 3935.899 kb on + strand, within BPHYT_RS17360at 3935.899 kb on + strand, within BPHYT_RS17360at 3935.899 kb on + strand, within BPHYT_RS17360at 3935.899 kb on + strand, within BPHYT_RS17360at 3935.899 kb on + strand, within BPHYT_RS17360at 3935.899 kb on + strand, within BPHYT_RS17360at 3935.900 kb on - strand, within BPHYT_RS17360at 3935.900 kb on - strand, within BPHYT_RS17360at 3935.900 kb on - strand, within BPHYT_RS17360at 3935.900 kb on - strand, within BPHYT_RS17360at 3935.900 kb on - strand, within BPHYT_RS17360at 3935.900 kb on - strand, within BPHYT_RS17360at 3936.339 kb on + strand, within BPHYT_RS17360at 3936.480 kb on + strandat 3936.481 kb on - strandat 3936.481 kb on - strandat 3936.481 kb on - strandat 3936.500 kb on + strandat 3936.501 kb on - strandat 3936.588 kb on + strandat 3936.588 kb on + strandat 3936.588 kb on + strandat 3936.588 kb on + strandat 3936.589 kb on - strandat 3936.637 kb on - strandat 3936.648 kb on + strandat 3936.655 kb on - strandat 3936.655 kb on - strandat 3936.655 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxy-D-ribonic lithium salt (C)
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3,934,517 + +1.0
3,934,652 - BPHYT_RS17355 0.16 +0.5
3,934,700 + BPHYT_RS17355 0.26 -1.8
3,934,825 + BPHYT_RS17355 0.53 +0.2
3,934,825 + BPHYT_RS17355 0.53 -2.5
3,934,825 + BPHYT_RS17355 0.53 +0.3
3,934,825 + BPHYT_RS17355 0.53 +0.8
3,934,826 - BPHYT_RS17355 0.53 +0.3
3,934,826 - BPHYT_RS17355 0.53 -0.6
3,934,826 - BPHYT_RS17355 0.53 -0.5
3,934,826 - BPHYT_RS17355 0.53 +0.5
3,934,826 - BPHYT_RS17355 0.53 +0.4
3,934,892 + BPHYT_RS17355 0.68 +0.7
3,934,893 - BPHYT_RS17355 0.68 -2.6
3,934,942 + BPHYT_RS17355 0.79 +1.9
3,934,942 + BPHYT_RS17355 0.79 -0.4
3,934,943 - BPHYT_RS17355 0.79 -0.5
3,934,943 - BPHYT_RS17355 0.79 -0.0
3,935,151 + -1.6
3,935,151 + +0.8
3,935,151 + +0.1
3,935,151 + -1.6
3,935,152 - -0.3
3,935,152 - +0.2
3,935,152 - +0.8
3,935,152 - +0.7
3,935,152 - -0.6
3,935,268 + -0.8
3,935,269 - +0.5
3,935,269 - +1.4
3,935,291 - -0.4
3,935,413 + BPHYT_RS17360 0.17 -0.9
3,935,590 - BPHYT_RS17360 0.31 +0.4
3,935,590 - BPHYT_RS17360 0.31 -0.2
3,935,596 + BPHYT_RS17360 0.31 -0.3
3,935,602 + BPHYT_RS17360 0.31 -2.1
3,935,635 + BPHYT_RS17360 0.34 +1.2
3,935,749 + BPHYT_RS17360 0.43 -0.0
3,935,749 + BPHYT_RS17360 0.43 -0.1
3,935,749 + BPHYT_RS17360 0.43 +1.0
3,935,749 + BPHYT_RS17360 0.43 -1.0
3,935,750 - BPHYT_RS17360 0.43 +0.6
3,935,750 - BPHYT_RS17360 0.43 +0.8
3,935,899 + BPHYT_RS17360 0.54 +0.9
3,935,899 + BPHYT_RS17360 0.54 -0.9
3,935,899 + BPHYT_RS17360 0.54 +0.1
3,935,899 + BPHYT_RS17360 0.54 -1.1
3,935,899 + BPHYT_RS17360 0.54 +0.7
3,935,899 + BPHYT_RS17360 0.54 +1.2
3,935,899 + BPHYT_RS17360 0.54 +0.2
3,935,900 - BPHYT_RS17360 0.54 +0.2
3,935,900 - BPHYT_RS17360 0.54 -1.0
3,935,900 - BPHYT_RS17360 0.54 +0.2
3,935,900 - BPHYT_RS17360 0.54 +0.3
3,935,900 - BPHYT_RS17360 0.54 +0.7
3,935,900 - BPHYT_RS17360 0.54 +2.2
3,936,339 + BPHYT_RS17360 0.88 +0.0
3,936,480 + -0.1
3,936,481 - +0.6
3,936,481 - +0.6
3,936,481 - +0.2
3,936,500 + +0.2
3,936,501 - +0.3
3,936,588 + +1.1
3,936,588 + -0.2
3,936,588 + +1.8
3,936,588 + +0.4
3,936,589 - +0.8
3,936,637 - +0.4
3,936,648 + -1.4
3,936,655 - -2.7
3,936,655 - -2.4
3,936,655 - -0.9

Or see this region's nucleotide sequence