Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS15970

Experiment: 2-Deoxy-D-ribonic lithium salt (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS15960 and BPHYT_RS15965 are separated by 17 nucleotidesBPHYT_RS15965 and BPHYT_RS15970 overlap by 19 nucleotidesBPHYT_RS15970 and BPHYT_RS15975 are separated by 57 nucleotides BPHYT_RS15960: BPHYT_RS15960 - iron-sulfur cluster binding protein, at 3,622,251 to 3,623,489 _RS15960 BPHYT_RS15965: BPHYT_RS15965 - hypothetical protein, at 3,623,507 to 3,624,091 _RS15965 BPHYT_RS15970: BPHYT_RS15970 - N-acetylmuramoyl-L-alanine amidase, at 3,624,073 to 3,625,653 _RS15970 BPHYT_RS15975: BPHYT_RS15975 - membrane protein, at 3,625,711 to 3,626,592 _RS15975 Position (kb) 3624 3625 3626Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3623.176 kb on + strand, within BPHYT_RS15960at 3623.176 kb on + strand, within BPHYT_RS15960at 3623.192 kb on + strand, within BPHYT_RS15960at 3623.260 kb on + strand, within BPHYT_RS15960at 3623.260 kb on + strand, within BPHYT_RS15960at 3625.811 kb on - strand, within BPHYT_RS15975at 3625.926 kb on - strand, within BPHYT_RS15975at 3625.956 kb on - strand, within BPHYT_RS15975at 3626.197 kb on + strand, within BPHYT_RS15975at 3626.351 kb on + strand, within BPHYT_RS15975at 3626.351 kb on + strand, within BPHYT_RS15975at 3626.351 kb on + strand, within BPHYT_RS15975at 3626.351 kb on + strand, within BPHYT_RS15975at 3626.351 kb on + strand, within BPHYT_RS15975at 3626.352 kb on - strand, within BPHYT_RS15975at 3626.352 kb on - strand, within BPHYT_RS15975at 3626.352 kb on - strand, within BPHYT_RS15975at 3626.352 kb on - strand, within BPHYT_RS15975at 3626.557 kb on + strandat 3626.557 kb on + strandat 3626.558 kb on - strandat 3626.627 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxy-D-ribonic lithium salt (C)
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3,623,176 + BPHYT_RS15960 0.75 -0.0
3,623,176 + BPHYT_RS15960 0.75 +1.5
3,623,192 + BPHYT_RS15960 0.76 +0.3
3,623,260 + BPHYT_RS15960 0.81 +0.3
3,623,260 + BPHYT_RS15960 0.81 +0.1
3,625,811 - BPHYT_RS15975 0.11 +3.4
3,625,926 - BPHYT_RS15975 0.24 +2.7
3,625,956 - BPHYT_RS15975 0.28 +1.4
3,626,197 + BPHYT_RS15975 0.55 +0.5
3,626,351 + BPHYT_RS15975 0.73 +0.1
3,626,351 + BPHYT_RS15975 0.73 +2.3
3,626,351 + BPHYT_RS15975 0.73 +1.5
3,626,351 + BPHYT_RS15975 0.73 +0.5
3,626,351 + BPHYT_RS15975 0.73 -2.0
3,626,352 - BPHYT_RS15975 0.73 +1.4
3,626,352 - BPHYT_RS15975 0.73 +0.6
3,626,352 - BPHYT_RS15975 0.73 +1.1
3,626,352 - BPHYT_RS15975 0.73 +0.7
3,626,557 + -0.6
3,626,557 + -0.5
3,626,558 - -0.0
3,626,627 + +1.7

Or see this region's nucleotide sequence