Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS12760

Experiment: 2-Deoxy-D-ribonic lithium salt (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS12745 and BPHYT_RS12750 are separated by 122 nucleotidesBPHYT_RS12750 and BPHYT_RS12755 are separated by 15 nucleotidesBPHYT_RS12755 and BPHYT_RS12760 are separated by 154 nucleotidesBPHYT_RS12760 and BPHYT_RS12765 are separated by 109 nucleotidesBPHYT_RS12765 and BPHYT_RS12770 are separated by 164 nucleotides BPHYT_RS12745: BPHYT_RS12745 - membrane protein, at 2,907,518 to 2,908,261 _RS12745 BPHYT_RS12750: BPHYT_RS12750 - hypothetical protein, at 2,908,384 to 2,908,581 _RS12750 BPHYT_RS12755: BPHYT_RS12755 - 2Fe-2S type ferredoxin, at 2,908,597 to 2,908,938 _RS12755 BPHYT_RS12760: BPHYT_RS12760 - molecular chaperone HscA, at 2,909,093 to 2,910,964 _RS12760 BPHYT_RS12765: BPHYT_RS12765 - Co-chaperone protein HscB homolog, at 2,911,074 to 2,911,601 _RS12765 BPHYT_RS12770: BPHYT_RS12770 - heme biosynthesis protein HemY, at 2,911,766 to 2,912,089 _RS12770 Position (kb) 2909 2910 2911Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2908.190 kb on + strandat 2908.190 kb on + strandat 2908.190 kb on + strandat 2908.191 kb on - strandat 2908.191 kb on - strandat 2908.191 kb on - strandat 2908.995 kb on - strandat 2909.017 kb on - strandat 2909.440 kb on - strand, within BPHYT_RS12760at 2911.020 kb on - strandat 2911.020 kb on - strandat 2911.020 kb on - strandat 2911.076 kb on - strandat 2911.076 kb on - strandat 2911.076 kb on - strandat 2911.715 kb on - strandat 2911.768 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxy-D-ribonic lithium salt (C)
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2,908,190 + +3.3
2,908,190 + +1.0
2,908,190 + -0.7
2,908,191 - +0.9
2,908,191 - -0.6
2,908,191 - -1.5
2,908,995 - +0.9
2,909,017 - +1.1
2,909,440 - BPHYT_RS12760 0.19 +0.4
2,911,020 - -0.0
2,911,020 - +0.9
2,911,020 - -2.7
2,911,076 - -0.7
2,911,076 - +0.2
2,911,076 - -0.3
2,911,715 - +0.1
2,911,768 - +0.5

Or see this region's nucleotide sequence