Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS07270

Experiment: 2-Deoxy-D-ribonic lithium salt (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS07260 and BPHYT_RS07265 are separated by 30 nucleotidesBPHYT_RS07265 and BPHYT_RS07270 are separated by 14 nucleotidesBPHYT_RS07270 and BPHYT_RS07275 are separated by 67 nucleotides BPHYT_RS07255: BPHYT_RS07255 - 4-oxalocrotonate decarboxylase, at 1,647,470 to 1,648,243 _RS07255 BPHYT_RS07260: BPHYT_RS07260 - 2-aminomuconate deaminase, at 1,648,240 to 1,648,671 _RS07260 BPHYT_RS07265: BPHYT_RS07265 - 3-hydroxyanthranilate 3,4-dioxygenase, at 1,648,702 to 1,649,226 _RS07265 BPHYT_RS07270: BPHYT_RS07270 - aminocarboxymuconate-semialdehyde decarboxylase, at 1,649,241 to 1,650,263 _RS07270 BPHYT_RS07275: BPHYT_RS07275 - kynureninase, at 1,650,331 to 1,651,560 _RS07275 Position (kb) 1649 1650 1651Strain fitness (log2 ratio) -1 0 1at 1648.669 kb on + strandat 1649.016 kb on - strand, within BPHYT_RS07265at 1650.718 kb on + strand, within BPHYT_RS07275at 1650.991 kb on + strand, within BPHYT_RS07275at 1651.115 kb on - strand, within BPHYT_RS07275

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxy-D-ribonic lithium salt (C)
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1,648,669 + +0.1
1,649,016 - BPHYT_RS07265 0.60 +0.6
1,650,718 + BPHYT_RS07275 0.31 -0.4
1,650,991 + BPHYT_RS07275 0.54 -0.6
1,651,115 - BPHYT_RS07275 0.64 +0.2

Or see this region's nucleotide sequence