Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS07245

Experiment: 2-Deoxy-D-ribonic lithium salt (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS07235 and BPHYT_RS07240 overlap by 4 nucleotidesBPHYT_RS07240 and BPHYT_RS07245 are separated by 11 nucleotidesBPHYT_RS07245 and BPHYT_RS07250 are separated by 13 nucleotides BPHYT_RS07235: BPHYT_RS07235 - 2-hydroxymuconic semialdehyde dehydrogenase, at 1,643,152 to 1,644,642 _RS07235 BPHYT_RS07240: BPHYT_RS07240 - 2-keto-4-pentenoate hydratase, at 1,644,639 to 1,645,460 _RS07240 BPHYT_RS07245: BPHYT_RS07245 - acetaldehyde dehydrogenase, at 1,645,472 to 1,646,416 _RS07245 BPHYT_RS07250: BPHYT_RS07250 - 4-hydroxy-2-oxovalerate aldolase, at 1,646,430 to 1,647,473 _RS07250 Position (kb) 1645 1646 1647Strain fitness (log2 ratio) -3 -2 -1 0 1at 1646.336 kb on + strandat 1646.565 kb on - strand, within BPHYT_RS07250at 1646.858 kb on + strand, within BPHYT_RS07250at 1646.926 kb on - strand, within BPHYT_RS07250at 1647.339 kb on + strand, within BPHYT_RS07250

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxy-D-ribonic lithium salt (C)
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1,646,336 + +0.0
1,646,565 - BPHYT_RS07250 0.13 -2.8
1,646,858 + BPHYT_RS07250 0.41 -0.1
1,646,926 - BPHYT_RS07250 0.48 -0.4
1,647,339 + BPHYT_RS07250 0.87 +0.1

Or see this region's nucleotide sequence