Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS02445

Experiment: 2-Deoxy-D-ribonic lithium salt (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS02435 and BPHYT_RS02440 are separated by 198 nucleotidesBPHYT_RS02440 and BPHYT_RS02445 are separated by 13 nucleotidesBPHYT_RS02445 and BPHYT_RS02450 are separated by 311 nucleotides BPHYT_RS02435: BPHYT_RS02435 - hypothetical protein, at 553,671 to 553,997 _RS02435 BPHYT_RS02440: BPHYT_RS02440 - octanoyltransferase, at 554,196 to 554,921 _RS02440 BPHYT_RS02445: BPHYT_RS02445 - lipoyl synthase, at 554,935 to 555,942 _RS02445 BPHYT_RS02450: BPHYT_RS02450 - hypothetical protein, at 556,254 to 556,700 _RS02450 Position (kb) 554 555 556Strain fitness (log2 ratio) -1 0 1at 553.971 kb on - strandat 553.971 kb on - strandat 553.971 kb on - strandat 555.949 kb on + strandat 555.956 kb on + strandat 555.957 kb on - strandat 556.070 kb on + strandat 556.073 kb on + strandat 556.677 kb on - strandat 556.677 kb on - strandat 556.701 kb on - strandat 556.901 kb on + strandat 556.931 kb on - strandat 556.931 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxy-D-ribonic lithium salt (C)
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553,971 - -0.0
553,971 - -1.1
553,971 - +1.5
555,949 + +0.3
555,956 + +1.2
555,957 - +0.6
556,070 + +0.0
556,073 + +0.6
556,677 - +1.0
556,677 - -0.6
556,701 - -0.4
556,901 + -0.2
556,931 - +0.8
556,931 - +0.9

Or see this region's nucleotide sequence