Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS01855

Experiment: 2-Deoxy-D-ribonic lithium salt (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS01850 and BPHYT_RS01855 are separated by 418 nucleotidesBPHYT_RS01855 and BPHYT_RS01860 are separated by 278 nucleotidesBPHYT_RS01860 and BPHYT_RS01865 are separated by 235 nucleotides BPHYT_RS01850: BPHYT_RS01850 - ATPase AAA, at 419,969 to 420,946 _RS01850 BPHYT_RS01855: BPHYT_RS01855 - FAD-dependent oxidoreductase, at 421,365 to 422,471 _RS01855 BPHYT_RS01860: BPHYT_RS01860 - high potential iron-sulfur protein, at 422,750 to 423,061 _RS01860 BPHYT_RS01865: BPHYT_RS01865 - major facilitator transporter, at 423,297 to 424,589 _RS01865 Position (kb) 421 422 423Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 420.455 kb on + strand, within BPHYT_RS01850at 420.456 kb on - strand, within BPHYT_RS01850at 420.512 kb on + strand, within BPHYT_RS01850at 420.512 kb on + strand, within BPHYT_RS01850at 420.512 kb on + strand, within BPHYT_RS01850at 420.512 kb on + strand, within BPHYT_RS01850at 420.513 kb on - strand, within BPHYT_RS01850at 420.513 kb on - strand, within BPHYT_RS01850at 420.513 kb on - strand, within BPHYT_RS01850at 420.533 kb on + strand, within BPHYT_RS01850at 420.533 kb on + strand, within BPHYT_RS01850at 420.533 kb on + strand, within BPHYT_RS01850at 420.533 kb on + strand, within BPHYT_RS01850at 420.533 kb on + strand, within BPHYT_RS01850at 420.534 kb on - strand, within BPHYT_RS01850at 420.534 kb on - strand, within BPHYT_RS01850at 420.534 kb on - strand, within BPHYT_RS01850at 420.677 kb on + strand, within BPHYT_RS01850at 420.677 kb on + strand, within BPHYT_RS01850at 420.677 kb on + strand, within BPHYT_RS01850at 420.677 kb on + strand, within BPHYT_RS01850at 420.678 kb on - strand, within BPHYT_RS01850at 420.678 kb on - strand, within BPHYT_RS01850at 420.678 kb on - strand, within BPHYT_RS01850at 420.731 kb on + strand, within BPHYT_RS01850at 420.754 kb on + strand, within BPHYT_RS01850at 420.755 kb on - strand, within BPHYT_RS01850at 420.995 kb on - strandat 421.047 kb on - strandat 421.096 kb on + strandat 421.096 kb on + strandat 421.097 kb on - strandat 421.098 kb on - strandat 421.131 kb on - strandat 421.131 kb on - strandat 421.156 kb on + strandat 421.157 kb on - strandat 421.157 kb on - strandat 421.157 kb on - strandat 421.217 kb on + strandat 421.281 kb on + strandat 421.282 kb on - strandat 421.384 kb on + strandat 421.384 kb on + strandat 421.527 kb on + strand, within BPHYT_RS01855at 421.527 kb on + strand, within BPHYT_RS01855at 421.528 kb on - strand, within BPHYT_RS01855at 421.528 kb on - strand, within BPHYT_RS01855at 421.528 kb on - strand, within BPHYT_RS01855at 421.528 kb on - strand, within BPHYT_RS01855at 421.528 kb on - strand, within BPHYT_RS01855at 421.528 kb on - strand, within BPHYT_RS01855at 421.528 kb on - strand, within BPHYT_RS01855at 421.584 kb on + strand, within BPHYT_RS01855at 421.585 kb on - strand, within BPHYT_RS01855at 421.585 kb on - strand, within BPHYT_RS01855at 421.585 kb on - strand, within BPHYT_RS01855at 421.590 kb on + strand, within BPHYT_RS01855at 421.591 kb on - strand, within BPHYT_RS01855at 422.058 kb on + strand, within BPHYT_RS01855at 422.058 kb on + strand, within BPHYT_RS01855at 422.100 kb on + strand, within BPHYT_RS01855at 422.202 kb on + strand, within BPHYT_RS01855at 422.203 kb on - strand, within BPHYT_RS01855at 422.203 kb on - strand, within BPHYT_RS01855at 422.235 kb on + strand, within BPHYT_RS01855at 422.254 kb on - strand, within BPHYT_RS01855at 422.315 kb on - strand, within BPHYT_RS01855at 422.647 kb on - strandat 422.689 kb on - strandat 422.731 kb on - strandat 422.731 kb on - strandat 422.732 kb on + strandat 422.880 kb on - strand, within BPHYT_RS01860at 422.924 kb on + strand, within BPHYT_RS01860at 422.925 kb on - strand, within BPHYT_RS01860at 422.953 kb on + strand, within BPHYT_RS01860at 422.954 kb on - strand, within BPHYT_RS01860at 422.954 kb on - strand, within BPHYT_RS01860at 422.960 kb on + strand, within BPHYT_RS01860at 423.044 kb on + strandat 423.044 kb on + strandat 423.045 kb on - strandat 423.047 kb on - strandat 423.206 kb on - strandat 423.253 kb on - strandat 423.265 kb on + strandat 423.266 kb on - strandat 423.266 kb on - strandat 423.272 kb on + strandat 423.370 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxy-D-ribonic lithium salt (C)
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420,455 + BPHYT_RS01850 0.50 +1.2
420,456 - BPHYT_RS01850 0.50 -0.5
420,512 + BPHYT_RS01850 0.56 +0.3
420,512 + BPHYT_RS01850 0.56 -0.2
420,512 + BPHYT_RS01850 0.56 -1.5
420,512 + BPHYT_RS01850 0.56 -0.5
420,513 - BPHYT_RS01850 0.56 -0.5
420,513 - BPHYT_RS01850 0.56 -0.4
420,513 - BPHYT_RS01850 0.56 +0.5
420,533 + BPHYT_RS01850 0.58 +0.2
420,533 + BPHYT_RS01850 0.58 -0.2
420,533 + BPHYT_RS01850 0.58 -0.5
420,533 + BPHYT_RS01850 0.58 -0.0
420,533 + BPHYT_RS01850 0.58 +0.4
420,534 - BPHYT_RS01850 0.58 -0.4
420,534 - BPHYT_RS01850 0.58 +0.1
420,534 - BPHYT_RS01850 0.58 +1.5
420,677 + BPHYT_RS01850 0.72 -2.4
420,677 + BPHYT_RS01850 0.72 -0.6
420,677 + BPHYT_RS01850 0.72 -1.7
420,677 + BPHYT_RS01850 0.72 +0.8
420,678 - BPHYT_RS01850 0.72 +0.8
420,678 - BPHYT_RS01850 0.72 -2.5
420,678 - BPHYT_RS01850 0.72 -0.7
420,731 + BPHYT_RS01850 0.78 -3.1
420,754 + BPHYT_RS01850 0.80 -2.4
420,755 - BPHYT_RS01850 0.80 -0.3
420,995 - -0.4
421,047 - -1.1
421,096 + -1.0
421,096 + -2.5
421,097 - -0.1
421,098 - -1.4
421,131 - +2.6
421,131 - -1.3
421,156 + +0.3
421,157 - -1.9
421,157 - -2.1
421,157 - +0.7
421,217 + +2.7
421,281 + -0.4
421,282 - -3.2
421,384 + -0.1
421,384 + -0.0
421,527 + BPHYT_RS01855 0.15 -1.1
421,527 + BPHYT_RS01855 0.15 -0.5
421,528 - BPHYT_RS01855 0.15 -2.7
421,528 - BPHYT_RS01855 0.15 +0.4
421,528 - BPHYT_RS01855 0.15 -2.2
421,528 - BPHYT_RS01855 0.15 +2.0
421,528 - BPHYT_RS01855 0.15 -0.4
421,528 - BPHYT_RS01855 0.15 -2.1
421,528 - BPHYT_RS01855 0.15 -1.5
421,584 + BPHYT_RS01855 0.20 +0.6
421,585 - BPHYT_RS01855 0.20 +0.7
421,585 - BPHYT_RS01855 0.20 -0.5
421,585 - BPHYT_RS01855 0.20 +0.0
421,590 + BPHYT_RS01855 0.20 +1.1
421,591 - BPHYT_RS01855 0.20 -2.4
422,058 + BPHYT_RS01855 0.63 +0.2
422,058 + BPHYT_RS01855 0.63 +0.5
422,100 + BPHYT_RS01855 0.66 -0.4
422,202 + BPHYT_RS01855 0.76 +1.0
422,203 - BPHYT_RS01855 0.76 +0.2
422,203 - BPHYT_RS01855 0.76 -0.2
422,235 + BPHYT_RS01855 0.79 +1.3
422,254 - BPHYT_RS01855 0.80 +2.1
422,315 - BPHYT_RS01855 0.86 -0.3
422,647 - +2.5
422,689 - -0.1
422,731 - +0.8
422,731 - -0.3
422,732 + -0.2
422,880 - BPHYT_RS01860 0.42 -0.1
422,924 + BPHYT_RS01860 0.56 -1.3
422,925 - BPHYT_RS01860 0.56 -3.9
422,953 + BPHYT_RS01860 0.65 -1.3
422,954 - BPHYT_RS01860 0.65 -0.6
422,954 - BPHYT_RS01860 0.65 -0.7
422,960 + BPHYT_RS01860 0.67 +0.1
423,044 + +1.4
423,044 + +0.2
423,045 - -2.1
423,047 - +0.3
423,206 - +0.6
423,253 - -1.5
423,265 + +2.5
423,266 - -1.5
423,266 - -0.7
423,272 + +1.0
423,370 - -0.7

Or see this region's nucleotide sequence