Experiment: Urea (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_25570 and AO356_25575 are separated by 52 nucleotides AO356_25575 and AO356_25580 are separated by 84 nucleotides AO356_25580 and AO356_25585 are separated by 215 nucleotides
AO356_25570: AO356_25570 - MFS transporter, at 5,780,018 to 5,781,322
_25570
AO356_25575: AO356_25575 - 5-carboxymethyl-2-hydroxymuconate isomerase, at 5,781,375 to 5,781,767
_25575
AO356_25580: AO356_25580 - 3,4-dihydroxyphenylacetate 2,3-dioxygenase, at 5,781,852 to 5,782,709
_25580
AO356_25585: AO356_25585 - 2-hydroxymuconic semialdehyde dehydrogenase, at 5,782,925 to 5,784,385
_25585
Position (kb) 5781
5782
5783 Strain fitness (log2 ratio) -2
-1
0
1 at 5781.592 kb on + strand, within AO356_25575 at 5781.746 kb on - strand at 5781.804 kb on + strand at 5781.805 kb on - strand at 5782.313 kb on - strand, within AO356_25580 at 5782.313 kb on - strand, within AO356_25580 at 5782.442 kb on - strand, within AO356_25580 at 5782.519 kb on + strand, within AO356_25580 at 5782.520 kb on - strand, within AO356_25580 at 5782.661 kb on - strand at 5782.884 kb on + strand at 5782.884 kb on + strand at 5782.896 kb on + strand at 5782.896 kb on + strand at 5782.896 kb on + strand at 5782.943 kb on + strand at 5782.944 kb on - strand at 5783.004 kb on + strand at 5783.005 kb on - strand at 5783.005 kb on - strand at 5783.155 kb on - strand, within AO356_25585 at 5783.670 kb on + strand, within AO356_25585
Per-strain Table
Position Strand Gene LocusTag Fraction Urea (N) remove 5,781,592 + AO356_25575 0.55 +0.3 5,781,746 - +0.4 5,781,804 + -0.9 5,781,805 - -0.7 5,782,313 - AO356_25580 0.54 -0.7 5,782,313 - AO356_25580 0.54 -2.1 5,782,442 - AO356_25580 0.69 -0.8 5,782,519 + AO356_25580 0.78 -0.8 5,782,520 - AO356_25580 0.78 -0.4 5,782,661 - +0.0 5,782,884 + -0.5 5,782,884 + +1.4 5,782,896 + -1.8 5,782,896 + +1.0 5,782,896 + -0.0 5,782,943 + -1.2 5,782,944 - +1.6 5,783,004 + -0.4 5,783,005 - +0.5 5,783,005 - -0.1 5,783,155 - AO356_25585 0.16 +0.3 5,783,670 + AO356_25585 0.51 +0.6
Or see this region's nucleotide sequence