Experiment: Urea (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_24600 and AO356_24605 are separated by 237 nucleotides AO356_24605 and AO356_24610 overlap by 14 nucleotides AO356_24610 and AO356_24615 are separated by 156 nucleotides AO356_24615 and AO356_24620 are separated by 449 nucleotides
AO356_24600: AO356_24600 - ketoglutarate semialdehyde dehydrogenase, at 5,562,432 to 5,564,012
_24600
AO356_24605: AO356_24605 - hypothetical protein, at 5,564,250 to 5,564,546
_24605
AO356_24610: AO356_24610 - 3-carboxymuconate cyclase, at 5,564,533 to 5,565,708
_24610
AO356_24615: AO356_24615 - hypothetical protein, at 5,565,865 to 5,566,044
_24615
AO356_24620: AO356_24620 - glutathione S-transferase, at 5,566,494 to 5,567,096
_24620
Position (kb) 5564
5565
5566 Strain fitness (log2 ratio) -1
0
1 at 5563.917 kb on + strand at 5563.918 kb on - strand at 5564.109 kb on + strand at 5564.109 kb on + strand at 5564.109 kb on + strand at 5564.109 kb on + strand at 5564.110 kb on - strand at 5564.110 kb on - strand at 5564.125 kb on - strand at 5564.125 kb on - strand at 5564.214 kb on + strand at 5564.635 kb on + strand at 5564.635 kb on + strand at 5564.635 kb on + strand at 5564.636 kb on - strand at 5564.636 kb on - strand at 5564.636 kb on - strand at 5564.663 kb on - strand, within AO356_24610 at 5564.830 kb on + strand, within AO356_24610 at 5565.115 kb on + strand, within AO356_24610 at 5565.115 kb on + strand, within AO356_24610 at 5565.115 kb on + strand, within AO356_24610 at 5565.115 kb on + strand, within AO356_24610 at 5565.116 kb on - strand, within AO356_24610 at 5565.116 kb on - strand, within AO356_24610 at 5565.116 kb on - strand, within AO356_24610 at 5565.116 kb on - strand, within AO356_24610 at 5565.116 kb on - strand, within AO356_24610 at 5565.157 kb on + strand, within AO356_24610 at 5565.158 kb on - strand, within AO356_24610 at 5565.164 kb on - strand, within AO356_24610 at 5565.433 kb on + strand, within AO356_24610 at 5565.707 kb on - strand at 5565.745 kb on - strand at 5565.760 kb on - strand at 5565.760 kb on - strand at 5565.770 kb on - strand at 5565.770 kb on - strand at 5565.770 kb on - strand at 5565.770 kb on - strand at 5565.976 kb on + strand, within AO356_24615 at 5565.977 kb on - strand, within AO356_24615 at 5565.988 kb on + strand, within AO356_24615 at 5565.988 kb on + strand, within AO356_24615 at 5565.989 kb on - strand, within AO356_24615 at 5566.012 kb on + strand, within AO356_24615 at 5566.012 kb on + strand, within AO356_24615 at 5566.206 kb on + strand at 5566.206 kb on + strand at 5566.206 kb on + strand at 5566.207 kb on - strand at 5566.207 kb on - strand at 5566.207 kb on - strand at 5566.256 kb on + strand at 5566.324 kb on - strand at 5566.367 kb on + strand at 5566.368 kb on - strand at 5566.495 kb on + strand at 5566.612 kb on - strand, within AO356_24620
Per-strain Table
Position Strand Gene LocusTag Fraction Urea (N) remove 5,563,917 + +0.4 5,563,918 - +0.1 5,564,109 + -0.3 5,564,109 + +0.7 5,564,109 + +0.2 5,564,109 + -0.4 5,564,110 - -0.7 5,564,110 - +0.0 5,564,125 - -0.4 5,564,125 - -1.0 5,564,214 + -0.9 5,564,635 + -0.2 5,564,635 + +0.4 5,564,635 + -1.2 5,564,636 - +1.1 5,564,636 - +0.9 5,564,636 - -0.1 5,564,663 - AO356_24610 0.11 +0.2 5,564,830 + AO356_24610 0.25 -0.6 5,565,115 + AO356_24610 0.49 -0.2 5,565,115 + AO356_24610 0.49 -1.5 5,565,115 + AO356_24610 0.49 -0.1 5,565,115 + AO356_24610 0.49 -1.2 5,565,116 - AO356_24610 0.50 -0.4 5,565,116 - AO356_24610 0.50 -0.8 5,565,116 - AO356_24610 0.50 +0.7 5,565,116 - AO356_24610 0.50 +0.5 5,565,116 - AO356_24610 0.50 +0.5 5,565,157 + AO356_24610 0.53 -0.0 5,565,158 - AO356_24610 0.53 +0.9 5,565,164 - AO356_24610 0.54 -0.2 5,565,433 + AO356_24610 0.77 +0.3 5,565,707 - -0.1 5,565,745 - -0.4 5,565,760 - +0.9 5,565,760 - -0.2 5,565,770 - -0.6 5,565,770 - +1.4 5,565,770 - +0.5 5,565,770 - +0.5 5,565,976 + AO356_24615 0.62 -0.2 5,565,977 - AO356_24615 0.62 +1.3 5,565,988 + AO356_24615 0.68 +0.1 5,565,988 + AO356_24615 0.68 -0.3 5,565,989 - AO356_24615 0.69 -0.2 5,566,012 + AO356_24615 0.82 +0.9 5,566,012 + AO356_24615 0.82 -0.1 5,566,206 + -0.9 5,566,206 + +0.6 5,566,206 + -0.8 5,566,207 - +0.8 5,566,207 - -0.7 5,566,207 - -0.1 5,566,256 + +0.0 5,566,324 - -1.0 5,566,367 + +0.1 5,566,368 - +1.4 5,566,495 + +0.5 5,566,612 - AO356_24620 0.20 +1.5
Or see this region's nucleotide sequence