Experiment: Urea (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_24600 and AO356_24605 are separated by 237 nucleotides AO356_24605 and AO356_24610 overlap by 14 nucleotides
AO356_24600: AO356_24600 - ketoglutarate semialdehyde dehydrogenase, at 5,562,432 to 5,564,012
_24600
AO356_24605: AO356_24605 - hypothetical protein, at 5,564,250 to 5,564,546
_24605
AO356_24610: AO356_24610 - 3-carboxymuconate cyclase, at 5,564,533 to 5,565,708
_24610
Position (kb) 5564
5565 Strain fitness (log2 ratio) -1
0
1 at 5563.459 kb on - strand, within AO356_24600 at 5563.917 kb on + strand at 5563.918 kb on - strand at 5564.109 kb on + strand at 5564.109 kb on + strand at 5564.109 kb on + strand at 5564.109 kb on + strand at 5564.110 kb on - strand at 5564.110 kb on - strand at 5564.125 kb on - strand at 5564.125 kb on - strand at 5564.214 kb on + strand at 5564.635 kb on + strand at 5564.635 kb on + strand at 5564.635 kb on + strand at 5564.636 kb on - strand at 5564.636 kb on - strand at 5564.636 kb on - strand at 5564.663 kb on - strand, within AO356_24610 at 5564.830 kb on + strand, within AO356_24610 at 5565.115 kb on + strand, within AO356_24610 at 5565.115 kb on + strand, within AO356_24610 at 5565.115 kb on + strand, within AO356_24610 at 5565.115 kb on + strand, within AO356_24610 at 5565.116 kb on - strand, within AO356_24610 at 5565.116 kb on - strand, within AO356_24610 at 5565.116 kb on - strand, within AO356_24610 at 5565.116 kb on - strand, within AO356_24610 at 5565.116 kb on - strand, within AO356_24610 at 5565.157 kb on + strand, within AO356_24610 at 5565.158 kb on - strand, within AO356_24610 at 5565.164 kb on - strand, within AO356_24610 at 5565.433 kb on + strand, within AO356_24610
Per-strain Table
Position Strand Gene LocusTag Fraction Urea (N) remove 5,563,459 - AO356_24600 0.65 -0.8 5,563,917 + +0.4 5,563,918 - +0.1 5,564,109 + -0.3 5,564,109 + +0.7 5,564,109 + +0.2 5,564,109 + -0.4 5,564,110 - -0.7 5,564,110 - +0.0 5,564,125 - -0.4 5,564,125 - -1.0 5,564,214 + -0.9 5,564,635 + -0.2 5,564,635 + +0.4 5,564,635 + -1.2 5,564,636 - +1.1 5,564,636 - +0.9 5,564,636 - -0.1 5,564,663 - AO356_24610 0.11 +0.2 5,564,830 + AO356_24610 0.25 -0.6 5,565,115 + AO356_24610 0.49 -0.2 5,565,115 + AO356_24610 0.49 -1.5 5,565,115 + AO356_24610 0.49 -0.1 5,565,115 + AO356_24610 0.49 -1.2 5,565,116 - AO356_24610 0.50 -0.4 5,565,116 - AO356_24610 0.50 -0.8 5,565,116 - AO356_24610 0.50 +0.7 5,565,116 - AO356_24610 0.50 +0.5 5,565,116 - AO356_24610 0.50 +0.5 5,565,157 + AO356_24610 0.53 -0.0 5,565,158 - AO356_24610 0.53 +0.9 5,565,164 - AO356_24610 0.54 -0.2 5,565,433 + AO356_24610 0.77 +0.3
Or see this region's nucleotide sequence