Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_14285

Experiment: Urea (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_14280 and AO356_14285 are separated by 8 nucleotidesAO356_14285 and AO356_14290 are separated by 74 nucleotidesAO356_14290 and AO356_14295 overlap by 10 nucleotides AO356_14280: AO356_14280 - tRNA threonylcarbamoyl adenosine modification protein TsaD, at 3,248,356 to 3,249,381 _14280 AO356_14285: AO356_14285 - glycerol-3-phosphate acyltransferase, at 3,249,390 to 3,249,959 _14285 AO356_14290: AO356_14290 - dihydroneopterin aldolase, at 3,250,034 to 3,250,387 _14290 AO356_14295: AO356_14295 - 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase, at 3,250,378 to 3,250,896 _14295 Position (kb) 3249 3250Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3249.387 kb on + strandat 3249.388 kb on - strandat 3249.391 kb on + strandat 3249.392 kb on - strandat 3249.392 kb on - strandat 3249.426 kb on + strandat 3249.426 kb on + strandat 3249.426 kb on + strandat 3249.426 kb on + strandat 3249.427 kb on - strandat 3249.427 kb on - strandat 3249.565 kb on + strand, within AO356_14285at 3249.565 kb on + strand, within AO356_14285at 3249.565 kb on + strand, within AO356_14285at 3249.566 kb on - strand, within AO356_14285at 3249.673 kb on + strand, within AO356_14285at 3249.673 kb on + strand, within AO356_14285at 3249.674 kb on - strand, within AO356_14285at 3249.674 kb on - strand, within AO356_14285at 3249.674 kb on - strand, within AO356_14285at 3249.931 kb on + strandat 3249.962 kb on + strandat 3249.962 kb on + strandat 3249.962 kb on + strandat 3249.962 kb on + strandat 3249.962 kb on + strandat 3249.962 kb on + strandat 3249.966 kb on + strandat 3249.966 kb on + strandat 3249.966 kb on + strandat 3249.966 kb on + strandat 3249.966 kb on + strandat 3249.966 kb on + strandat 3249.966 kb on + strandat 3250.416 kb on + strandat 3250.670 kb on - strand, within AO356_14295at 3250.670 kb on - strand, within AO356_14295at 3250.670 kb on - strand, within AO356_14295at 3250.714 kb on - strand, within AO356_14295at 3250.875 kb on + strandat 3250.875 kb on + strandat 3250.875 kb on + strandat 3250.875 kb on + strandat 3250.876 kb on - strandat 3250.876 kb on - strandat 3250.876 kb on - strandat 3250.876 kb on - strandat 3250.876 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Urea (N)
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3,249,387 + -1.9
3,249,388 - +0.8
3,249,391 + +0.2
3,249,392 - -0.8
3,249,392 - +0.3
3,249,426 + +0.5
3,249,426 + +1.0
3,249,426 + +0.5
3,249,426 + +1.6
3,249,427 - +0.0
3,249,427 - +1.8
3,249,565 + AO356_14285 0.31 +0.2
3,249,565 + AO356_14285 0.31 +0.4
3,249,565 + AO356_14285 0.31 -1.4
3,249,566 - AO356_14285 0.31 +0.2
3,249,673 + AO356_14285 0.50 +3.3
3,249,673 + AO356_14285 0.50 +0.3
3,249,674 - AO356_14285 0.50 +0.4
3,249,674 - AO356_14285 0.50 +0.5
3,249,674 - AO356_14285 0.50 +0.5
3,249,931 + -0.4
3,249,962 + -0.9
3,249,962 + +0.1
3,249,962 + +0.9
3,249,962 + +1.6
3,249,962 + -0.1
3,249,962 + +0.1
3,249,966 + +0.2
3,249,966 + +1.1
3,249,966 + +0.9
3,249,966 + -1.2
3,249,966 + +0.4
3,249,966 + +0.5
3,249,966 + -0.5
3,250,416 + +0.3
3,250,670 - AO356_14295 0.56 +1.5
3,250,670 - AO356_14295 0.56 -0.1
3,250,670 - AO356_14295 0.56 +0.3
3,250,714 - AO356_14295 0.65 -0.2
3,250,875 + +0.4
3,250,875 + +0.6
3,250,875 + -2.1
3,250,875 + -0.9
3,250,876 - +0.2
3,250,876 - +0.1
3,250,876 - -2.1
3,250,876 - -0.7
3,250,876 - +0.2

Or see this region's nucleotide sequence