Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_10450

Experiment: Urea (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_10440 and AO356_10445 are separated by 148 nucleotidesAO356_10445 and AO356_10450 are separated by 1 nucleotidesAO356_10450 and AO356_10455 are separated by 136 nucleotides AO356_10440: AO356_10440 - hypothetical protein, at 2,355,525 to 2,355,779 _10440 AO356_10445: AO356_10445 - serine protease, at 2,355,928 to 2,356,452 _10445 AO356_10450: AO356_10450 - hypothetical protein, at 2,356,454 to 2,357,215 _10450 AO356_10455: AO356_10455 - aspartyl beta-hydroxylase, at 2,357,352 to 2,358,296 _10455 Position (kb) 2356 2357 2358Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6at 2355.479 kb on + strandat 2355.479 kb on + strandat 2355.480 kb on - strandat 2355.480 kb on - strandat 2355.480 kb on - strandat 2355.480 kb on - strandat 2355.488 kb on + strandat 2355.488 kb on + strandat 2355.489 kb on - strandat 2355.489 kb on - strandat 2355.542 kb on + strandat 2355.577 kb on - strand, within AO356_10440at 2355.577 kb on - strand, within AO356_10440at 2355.577 kb on - strand, within AO356_10440at 2355.577 kb on - strand, within AO356_10440at 2355.577 kb on - strand, within AO356_10440at 2355.577 kb on - strand, within AO356_10440at 2355.577 kb on - strand, within AO356_10440at 2355.577 kb on - strand, within AO356_10440at 2355.577 kb on - strand, within AO356_10440at 2355.577 kb on - strand, within AO356_10440at 2355.828 kb on + strandat 2355.828 kb on + strandat 2355.828 kb on + strandat 2355.829 kb on - strandat 2355.893 kb on + strandat 2355.893 kb on + strandat 2355.894 kb on - strandat 2355.894 kb on - strandat 2355.894 kb on - strandat 2356.081 kb on + strand, within AO356_10445at 2356.082 kb on - strand, within AO356_10445at 2356.082 kb on - strand, within AO356_10445at 2356.448 kb on + strandat 2356.536 kb on - strand, within AO356_10450at 2356.560 kb on + strand, within AO356_10450at 2356.561 kb on - strand, within AO356_10450at 2356.614 kb on + strand, within AO356_10450at 2356.614 kb on + strand, within AO356_10450at 2356.718 kb on + strand, within AO356_10450at 2356.718 kb on + strand, within AO356_10450at 2356.718 kb on + strand, within AO356_10450at 2356.718 kb on + strand, within AO356_10450at 2356.718 kb on + strand, within AO356_10450at 2356.719 kb on - strand, within AO356_10450at 2356.719 kb on - strand, within AO356_10450at 2357.105 kb on + strand, within AO356_10450at 2357.106 kb on - strand, within AO356_10450at 2357.138 kb on - strand, within AO356_10450at 2357.221 kb on + strandat 2357.222 kb on - strandat 2357.584 kb on + strand, within AO356_10455at 2357.584 kb on + strand, within AO356_10455at 2357.584 kb on + strand, within AO356_10455at 2357.584 kb on + strand, within AO356_10455at 2357.585 kb on - strand, within AO356_10455at 2357.585 kb on - strand, within AO356_10455at 2357.782 kb on + strand, within AO356_10455at 2357.966 kb on + strand, within AO356_10455at 2357.966 kb on + strand, within AO356_10455at 2357.966 kb on + strand, within AO356_10455at 2357.990 kb on + strand, within AO356_10455at 2357.991 kb on - strand, within AO356_10455at 2357.991 kb on - strand, within AO356_10455at 2357.996 kb on + strand, within AO356_10455at 2357.996 kb on + strand, within AO356_10455at 2357.996 kb on + strand, within AO356_10455

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Per-strain Table

Position Strand Gene LocusTag Fraction Urea (N)
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2,355,479 + +0.2
2,355,479 + +0.2
2,355,480 - +0.0
2,355,480 - -0.5
2,355,480 - +1.1
2,355,480 - +0.3
2,355,488 + -0.6
2,355,488 + -1.6
2,355,489 - +0.3
2,355,489 - +0.4
2,355,542 + +0.6
2,355,577 - AO356_10440 0.20 -1.5
2,355,577 - AO356_10440 0.20 +0.4
2,355,577 - AO356_10440 0.20 +0.7
2,355,577 - AO356_10440 0.20 +0.4
2,355,577 - AO356_10440 0.20 +0.0
2,355,577 - AO356_10440 0.20 +4.0
2,355,577 - AO356_10440 0.20 -0.2
2,355,577 - AO356_10440 0.20 -0.2
2,355,577 - AO356_10440 0.20 +0.1
2,355,577 - AO356_10440 0.20 -0.6
2,355,828 + +0.3
2,355,828 + -0.4
2,355,828 + +0.2
2,355,829 - -0.8
2,355,893 + -0.3
2,355,893 + -0.7
2,355,894 - -0.7
2,355,894 - +0.6
2,355,894 - -0.7
2,356,081 + AO356_10445 0.29 +0.8
2,356,082 - AO356_10445 0.29 -0.0
2,356,082 - AO356_10445 0.29 +0.7
2,356,448 + +0.0
2,356,536 - AO356_10450 0.11 -0.5
2,356,560 + AO356_10450 0.14 +6.5
2,356,561 - AO356_10450 0.14 +0.8
2,356,614 + AO356_10450 0.21 -0.4
2,356,614 + AO356_10450 0.21 -0.5
2,356,718 + AO356_10450 0.35 +0.5
2,356,718 + AO356_10450 0.35 +0.7
2,356,718 + AO356_10450 0.35 +0.6
2,356,718 + AO356_10450 0.35 +0.8
2,356,718 + AO356_10450 0.35 +1.2
2,356,719 - AO356_10450 0.35 -0.0
2,356,719 - AO356_10450 0.35 +0.2
2,357,105 + AO356_10450 0.85 -0.2
2,357,106 - AO356_10450 0.86 +1.2
2,357,138 - AO356_10450 0.90 +1.3
2,357,221 + -0.7
2,357,222 - +1.8
2,357,584 + AO356_10455 0.25 +0.5
2,357,584 + AO356_10455 0.25 +1.5
2,357,584 + AO356_10455 0.25 +1.8
2,357,584 + AO356_10455 0.25 +0.4
2,357,585 - AO356_10455 0.25 +0.9
2,357,585 - AO356_10455 0.25 +0.0
2,357,782 + AO356_10455 0.46 -0.4
2,357,966 + AO356_10455 0.65 -0.5
2,357,966 + AO356_10455 0.65 -2.1
2,357,966 + AO356_10455 0.65 -0.9
2,357,990 + AO356_10455 0.68 +0.7
2,357,991 - AO356_10455 0.68 +0.2
2,357,991 - AO356_10455 0.68 -0.6
2,357,996 + AO356_10455 0.68 +0.2
2,357,996 + AO356_10455 0.68 -0.6
2,357,996 + AO356_10455 0.68 +1.0

Or see this region's nucleotide sequence