Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_06810

Experiment: Urea (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_06805 and AO356_06810 are separated by 92 nucleotidesAO356_06810 and AO356_06815 are separated by 195 nucleotidesAO356_06815 and AO356_06820 are separated by 41 nucleotides AO356_06805: AO356_06805 - hypothetical protein, at 1,503,631 to 1,505,139 _06805 AO356_06810: AO356_06810 - hypothetical protein, at 1,505,232 to 1,505,777 _06810 AO356_06815: AO356_06815 - isomerase, at 1,505,973 to 1,506,722 _06815 AO356_06820: AO356_06820 - arylsulfatase, at 1,506,764 to 1,507,417 _06820 Position (kb) 1505 1506Strain fitness (log2 ratio) -2 -1 0 1 2at 1504.266 kb on - strand, within AO356_06805at 1504.276 kb on + strand, within AO356_06805at 1504.276 kb on + strand, within AO356_06805at 1504.301 kb on - strand, within AO356_06805at 1504.397 kb on + strand, within AO356_06805at 1504.397 kb on + strand, within AO356_06805at 1504.398 kb on - strand, within AO356_06805at 1504.398 kb on - strand, within AO356_06805at 1504.418 kb on - strand, within AO356_06805at 1504.418 kb on - strand, within AO356_06805at 1504.483 kb on + strand, within AO356_06805at 1504.621 kb on + strand, within AO356_06805at 1504.623 kb on + strand, within AO356_06805at 1504.624 kb on - strand, within AO356_06805at 1504.624 kb on - strand, within AO356_06805at 1504.645 kb on + strand, within AO356_06805at 1504.645 kb on + strand, within AO356_06805at 1504.646 kb on - strand, within AO356_06805at 1504.646 kb on - strand, within AO356_06805at 1504.762 kb on - strand, within AO356_06805at 1504.845 kb on + strand, within AO356_06805at 1504.845 kb on + strand, within AO356_06805at 1504.845 kb on + strand, within AO356_06805at 1504.845 kb on + strand, within AO356_06805at 1504.845 kb on + strand, within AO356_06805at 1504.923 kb on + strand, within AO356_06805at 1504.923 kb on + strand, within AO356_06805at 1504.923 kb on + strand, within AO356_06805at 1504.924 kb on - strand, within AO356_06805at 1504.924 kb on - strand, within AO356_06805at 1505.026 kb on + strandat 1505.027 kb on - strandat 1505.027 kb on - strandat 1505.027 kb on - strandat 1505.027 kb on - strandat 1505.027 kb on - strandat 1505.030 kb on + strandat 1505.030 kb on + strandat 1505.048 kb on - strandat 1505.048 kb on - strandat 1505.169 kb on - strandat 1505.270 kb on - strandat 1505.272 kb on + strandat 1505.273 kb on - strandat 1505.830 kb on + strandat 1505.831 kb on - strandat 1505.831 kb on - strandat 1505.834 kb on + strandat 1505.834 kb on + strandat 1505.834 kb on + strandat 1505.834 kb on + strandat 1505.835 kb on - strandat 1505.835 kb on - strandat 1505.835 kb on - strandat 1505.835 kb on - strandat 1505.835 kb on - strandat 1505.835 kb on - strandat 1505.835 kb on - strandat 1505.835 kb on - strandat 1505.840 kb on - strandat 1506.015 kb on - strandat 1506.098 kb on + strand, within AO356_06815at 1506.163 kb on + strand, within AO356_06815at 1506.163 kb on + strand, within AO356_06815at 1506.163 kb on + strand, within AO356_06815at 1506.163 kb on + strand, within AO356_06815at 1506.164 kb on - strand, within AO356_06815at 1506.164 kb on - strand, within AO356_06815at 1506.164 kb on - strand, within AO356_06815at 1506.164 kb on - strand, within AO356_06815at 1506.215 kb on - strand, within AO356_06815at 1506.286 kb on + strand, within AO356_06815at 1506.286 kb on + strand, within AO356_06815at 1506.286 kb on + strand, within AO356_06815at 1506.286 kb on + strand, within AO356_06815at 1506.286 kb on + strand, within AO356_06815at 1506.286 kb on + strand, within AO356_06815at 1506.286 kb on + strand, within AO356_06815at 1506.287 kb on - strand, within AO356_06815at 1506.287 kb on - strand, within AO356_06815at 1506.287 kb on - strand, within AO356_06815at 1506.287 kb on - strand, within AO356_06815at 1506.287 kb on - strand, within AO356_06815at 1506.287 kb on - strand, within AO356_06815at 1506.287 kb on - strand, within AO356_06815at 1506.289 kb on + strand, within AO356_06815at 1506.289 kb on + strand, within AO356_06815at 1506.289 kb on + strand, within AO356_06815at 1506.290 kb on - strand, within AO356_06815at 1506.290 kb on - strand, within AO356_06815at 1506.290 kb on - strand, within AO356_06815at 1506.290 kb on - strand, within AO356_06815at 1506.353 kb on - strand, within AO356_06815at 1506.353 kb on - strand, within AO356_06815at 1506.365 kb on - strand, within AO356_06815at 1506.383 kb on - strand, within AO356_06815at 1506.383 kb on - strand, within AO356_06815at 1506.386 kb on + strand, within AO356_06815at 1506.386 kb on + strand, within AO356_06815at 1506.386 kb on + strand, within AO356_06815at 1506.386 kb on + strand, within AO356_06815at 1506.387 kb on - strand, within AO356_06815at 1506.387 kb on - strand, within AO356_06815at 1506.387 kb on - strand, within AO356_06815at 1506.411 kb on - strand, within AO356_06815at 1506.669 kb on + strandat 1506.670 kb on - strandat 1506.670 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Urea (N)
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1,504,266 - AO356_06805 0.42 +1.4
1,504,276 + AO356_06805 0.43 +0.6
1,504,276 + AO356_06805 0.43 -0.1
1,504,301 - AO356_06805 0.44 +0.5
1,504,397 + AO356_06805 0.51 -1.7
1,504,397 + AO356_06805 0.51 -0.5
1,504,398 - AO356_06805 0.51 -0.3
1,504,398 - AO356_06805 0.51 -0.9
1,504,418 - AO356_06805 0.52 -0.8
1,504,418 - AO356_06805 0.52 +0.4
1,504,483 + AO356_06805 0.56 +1.0
1,504,621 + AO356_06805 0.66 +0.4
1,504,623 + AO356_06805 0.66 -0.6
1,504,624 - AO356_06805 0.66 -0.6
1,504,624 - AO356_06805 0.66 +0.8
1,504,645 + AO356_06805 0.67 +0.5
1,504,645 + AO356_06805 0.67 -0.9
1,504,646 - AO356_06805 0.67 -0.2
1,504,646 - AO356_06805 0.67 +2.3
1,504,762 - AO356_06805 0.75 +1.2
1,504,845 + AO356_06805 0.80 -0.2
1,504,845 + AO356_06805 0.80 +0.9
1,504,845 + AO356_06805 0.80 +0.3
1,504,845 + AO356_06805 0.80 +0.6
1,504,845 + AO356_06805 0.80 +0.1
1,504,923 + AO356_06805 0.86 -0.0
1,504,923 + AO356_06805 0.86 -0.9
1,504,923 + AO356_06805 0.86 -0.7
1,504,924 - AO356_06805 0.86 +0.1
1,504,924 - AO356_06805 0.86 +0.3
1,505,026 + +1.0
1,505,027 - -0.5
1,505,027 - -2.1
1,505,027 - +1.0
1,505,027 - +0.6
1,505,027 - +0.2
1,505,030 + +0.7
1,505,030 + +0.3
1,505,048 - -0.6
1,505,048 - -0.6
1,505,169 - -1.6
1,505,270 - -0.0
1,505,272 + +0.7
1,505,273 - -0.3
1,505,830 + +0.2
1,505,831 - +0.3
1,505,831 - -0.4
1,505,834 + +0.2
1,505,834 + +0.7
1,505,834 + -1.6
1,505,834 + +0.2
1,505,835 - -0.2
1,505,835 - +0.4
1,505,835 - +0.9
1,505,835 - -1.1
1,505,835 - -1.1
1,505,835 - +1.1
1,505,835 - -0.5
1,505,835 - -0.7
1,505,840 - +0.4
1,506,015 - +0.3
1,506,098 + AO356_06815 0.17 -0.7
1,506,163 + AO356_06815 0.25 -0.4
1,506,163 + AO356_06815 0.25 +0.6
1,506,163 + AO356_06815 0.25 -1.4
1,506,163 + AO356_06815 0.25 +0.7
1,506,164 - AO356_06815 0.25 -0.6
1,506,164 - AO356_06815 0.25 +0.5
1,506,164 - AO356_06815 0.25 -0.7
1,506,164 - AO356_06815 0.25 -0.8
1,506,215 - AO356_06815 0.32 +0.1
1,506,286 + AO356_06815 0.42 +0.8
1,506,286 + AO356_06815 0.42 -0.2
1,506,286 + AO356_06815 0.42 +0.6
1,506,286 + AO356_06815 0.42 -0.2
1,506,286 + AO356_06815 0.42 +0.8
1,506,286 + AO356_06815 0.42 +0.1
1,506,286 + AO356_06815 0.42 -2.3
1,506,287 - AO356_06815 0.42 -0.1
1,506,287 - AO356_06815 0.42 -0.6
1,506,287 - AO356_06815 0.42 +0.1
1,506,287 - AO356_06815 0.42 +2.3
1,506,287 - AO356_06815 0.42 +0.5
1,506,287 - AO356_06815 0.42 +1.7
1,506,287 - AO356_06815 0.42 -0.3
1,506,289 + AO356_06815 0.42 +0.4
1,506,289 + AO356_06815 0.42 -0.3
1,506,289 + AO356_06815 0.42 +0.6
1,506,290 - AO356_06815 0.42 +0.2
1,506,290 - AO356_06815 0.42 -0.1
1,506,290 - AO356_06815 0.42 +0.7
1,506,290 - AO356_06815 0.42 -0.4
1,506,353 - AO356_06815 0.51 -0.3
1,506,353 - AO356_06815 0.51 -0.8
1,506,365 - AO356_06815 0.52 +1.5
1,506,383 - AO356_06815 0.55 -1.9
1,506,383 - AO356_06815 0.55 -0.1
1,506,386 + AO356_06815 0.55 +0.5
1,506,386 + AO356_06815 0.55 +0.4
1,506,386 + AO356_06815 0.55 -1.5
1,506,386 + AO356_06815 0.55 -1.6
1,506,387 - AO356_06815 0.55 +0.9
1,506,387 - AO356_06815 0.55 +0.5
1,506,387 - AO356_06815 0.55 -0.2
1,506,411 - AO356_06815 0.58 +0.3
1,506,669 + -1.4
1,506,670 - -0.7
1,506,670 - +0.5

Or see this region's nucleotide sequence