Experiment: Urea (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_04715 and AO356_04720 are separated by 139 nucleotides AO356_04720 and AO356_04725 are separated by 121 nucleotides AO356_04725 and AO356_04730 are separated by 28 nucleotides
AO356_04715: AO356_04715 - AsnC family transcriptional regulator, at 1,060,591 to 1,061,073
_04715
AO356_04720: AO356_04720 - lysine transporter LysE, at 1,061,213 to 1,061,842
_04720
AO356_04725: AO356_04725 - hypothetical protein, at 1,061,964 to 1,062,323
_04725
AO356_04730: AO356_04730 - hypothetical protein, at 1,062,352 to 1,062,762
_04730
Position (kb)
1061
1062 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1060.220 kb on + strand at 1060.230 kb on + strand at 1060.230 kb on + strand at 1060.230 kb on + strand at 1060.230 kb on + strand at 1060.231 kb on - strand at 1060.231 kb on - strand at 1060.280 kb on + strand at 1060.302 kb on + strand at 1060.302 kb on + strand at 1060.320 kb on + strand at 1060.321 kb on - strand at 1060.355 kb on + strand at 1060.355 kb on + strand at 1060.356 kb on - strand at 1060.356 kb on - strand at 1060.356 kb on - strand at 1060.356 kb on - strand at 1060.360 kb on + strand at 1060.360 kb on + strand at 1060.360 kb on + strand at 1060.406 kb on + strand at 1060.407 kb on - strand at 1060.407 kb on - strand at 1060.407 kb on - strand at 1060.483 kb on + strand at 1060.483 kb on + strand at 1060.483 kb on + strand at 1060.483 kb on + strand at 1060.484 kb on - strand at 1060.484 kb on - strand at 1060.494 kb on + strand at 1060.494 kb on + strand at 1060.495 kb on - strand at 1060.495 kb on - strand at 1060.518 kb on + strand at 1060.579 kb on + strand at 1060.579 kb on + strand at 1060.579 kb on + strand at 1060.579 kb on + strand at 1060.580 kb on - strand at 1060.580 kb on - strand at 1060.580 kb on - strand at 1060.647 kb on + strand, within AO356_04715 at 1060.648 kb on - strand, within AO356_04715 at 1060.721 kb on + strand, within AO356_04715 at 1060.721 kb on + strand, within AO356_04715 at 1060.722 kb on - strand, within AO356_04715 at 1060.729 kb on + strand, within AO356_04715 at 1060.729 kb on + strand, within AO356_04715 at 1060.730 kb on - strand, within AO356_04715 at 1061.173 kb on + strand at 1061.255 kb on + strand at 1061.255 kb on + strand at 1061.255 kb on + strand at 1061.255 kb on + strand at 1061.255 kb on + strand at 1061.255 kb on + strand at 1061.256 kb on - strand at 1061.256 kb on - strand at 1061.256 kb on - strand at 1061.256 kb on - strand at 1061.256 kb on - strand at 1061.256 kb on - strand at 1061.256 kb on - strand at 1061.256 kb on - strand at 1061.256 kb on - strand at 1061.256 kb on - strand at 1061.397 kb on + strand, within AO356_04720 at 1061.457 kb on + strand, within AO356_04720 at 1061.540 kb on + strand, within AO356_04720 at 1061.541 kb on - strand, within AO356_04720 at 1061.721 kb on + strand, within AO356_04720 at 1061.721 kb on + strand, within AO356_04720 at 1061.721 kb on + strand, within AO356_04720 at 1061.721 kb on + strand, within AO356_04720 at 1061.721 kb on + strand, within AO356_04720 at 1061.722 kb on - strand, within AO356_04720 at 1061.722 kb on - strand, within AO356_04720 at 1061.772 kb on + strand, within AO356_04720 at 1061.772 kb on + strand, within AO356_04720 at 1061.773 kb on - strand, within AO356_04720 at 1061.840 kb on + strand at 1061.840 kb on + strand at 1061.854 kb on - strand at 1061.991 kb on + strand at 1061.991 kb on + strand at 1061.991 kb on + strand at 1062.020 kb on + strand, within AO356_04725 at 1062.020 kb on + strand, within AO356_04725 at 1062.021 kb on - strand, within AO356_04725 at 1062.021 kb on - strand, within AO356_04725 at 1062.045 kb on + strand, within AO356_04725 at 1062.046 kb on - strand, within AO356_04725 at 1062.046 kb on - strand, within AO356_04725 at 1062.073 kb on + strand, within AO356_04725 at 1062.073 kb on + strand, within AO356_04725 at 1062.074 kb on - strand, within AO356_04725 at 1062.074 kb on - strand, within AO356_04725 at 1062.086 kb on + strand, within AO356_04725 at 1062.101 kb on - strand, within AO356_04725 at 1062.101 kb on - strand, within AO356_04725 at 1062.101 kb on - strand, within AO356_04725 at 1062.102 kb on + strand, within AO356_04725 at 1062.106 kb on - strand, within AO356_04725 at 1062.141 kb on - strand, within AO356_04725 at 1062.180 kb on + strand, within AO356_04725 at 1062.180 kb on + strand, within AO356_04725 at 1062.180 kb on + strand, within AO356_04725 at 1062.181 kb on - strand, within AO356_04725 at 1062.181 kb on - strand, within AO356_04725 at 1062.181 kb on - strand, within AO356_04725 at 1062.290 kb on + strand at 1062.290 kb on + strand at 1062.291 kb on - strand at 1062.291 kb on - strand at 1062.613 kb on + strand, within AO356_04730 at 1062.613 kb on + strand, within AO356_04730 at 1062.613 kb on + strand, within AO356_04730 at 1062.679 kb on + strand, within AO356_04730 at 1062.679 kb on + strand, within AO356_04730 at 1062.679 kb on + strand, within AO356_04730 at 1062.679 kb on + strand, within AO356_04730 at 1062.679 kb on + strand, within AO356_04730 at 1062.679 kb on + strand, within AO356_04730 at 1062.680 kb on - strand, within AO356_04730 at 1062.680 kb on - strand, within AO356_04730 at 1062.680 kb on - strand, within AO356_04730 at 1062.680 kb on - strand, within AO356_04730 at 1062.680 kb on - strand, within AO356_04730 at 1062.680 kb on - strand, within AO356_04730 at 1062.680 kb on - strand, within AO356_04730 at 1062.743 kb on + strand at 1062.743 kb on + strand at 1062.744 kb on - strand at 1062.744 kb on - strand at 1062.744 kb on - strand at 1062.798 kb on + strand at 1062.809 kb on + strand at 1062.809 kb on + strand at 1062.810 kb on - strand at 1062.810 kb on - strand at 1062.810 kb on - strand at 1062.826 kb on + strand at 1062.827 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Urea (N) remove 1,060,220 + +0.5 1,060,230 + -0.0 1,060,230 + -0.0 1,060,230 + +0.4 1,060,230 + -1.3 1,060,231 - +0.4 1,060,231 - -1.0 1,060,280 + -0.4 1,060,302 + +0.6 1,060,302 + -0.5 1,060,320 + +1.0 1,060,321 - +0.4 1,060,355 + -0.2 1,060,355 + -0.2 1,060,356 - +0.3 1,060,356 - +1.0 1,060,356 - -0.7 1,060,356 - -0.1 1,060,360 + +0.2 1,060,360 + +0.2 1,060,360 + -1.0 1,060,406 + +0.4 1,060,407 - +0.7 1,060,407 - +0.6 1,060,407 - +0.1 1,060,483 + +0.1 1,060,483 + +0.6 1,060,483 + +0.3 1,060,483 + +0.4 1,060,484 - -1.7 1,060,484 - -0.8 1,060,494 + +0.3 1,060,494 + -1.1 1,060,495 - +0.4 1,060,495 - +1.3 1,060,518 + -0.2 1,060,579 + +0.3 1,060,579 + +0.2 1,060,579 + -0.6 1,060,579 + +1.5 1,060,580 - -0.5 1,060,580 - +0.4 1,060,580 - +0.8 1,060,647 + AO356_04715 0.12 +0.1 1,060,648 - AO356_04715 0.12 +0.6 1,060,721 + AO356_04715 0.27 +0.3 1,060,721 + AO356_04715 0.27 -1.0 1,060,722 - AO356_04715 0.27 -1.0 1,060,729 + AO356_04715 0.29 -0.0 1,060,729 + AO356_04715 0.29 -0.4 1,060,730 - AO356_04715 0.29 +0.3 1,061,173 + +0.4 1,061,255 + -1.1 1,061,255 + -0.1 1,061,255 + +0.3 1,061,255 + -0.5 1,061,255 + +0.5 1,061,255 + -0.8 1,061,256 - -0.9 1,061,256 - +0.5 1,061,256 - +0.1 1,061,256 - -2.5 1,061,256 - +1.1 1,061,256 - -0.0 1,061,256 - +0.8 1,061,256 - +0.1 1,061,256 - +0.2 1,061,256 - -0.2 1,061,397 + AO356_04720 0.29 -0.6 1,061,457 + AO356_04720 0.39 -0.7 1,061,540 + AO356_04720 0.52 -1.0 1,061,541 - AO356_04720 0.52 +0.6 1,061,721 + AO356_04720 0.81 -0.9 1,061,721 + AO356_04720 0.81 -1.1 1,061,721 + AO356_04720 0.81 -0.2 1,061,721 + AO356_04720 0.81 +0.3 1,061,721 + AO356_04720 0.81 +1.3 1,061,722 - AO356_04720 0.81 -0.2 1,061,722 - AO356_04720 0.81 -0.1 1,061,772 + AO356_04720 0.89 -0.9 1,061,772 + AO356_04720 0.89 -1.6 1,061,773 - AO356_04720 0.89 +0.7 1,061,840 + +0.3 1,061,840 + +0.5 1,061,854 - +0.2 1,061,991 + -0.6 1,061,991 + +0.1 1,061,991 + +0.4 1,062,020 + AO356_04725 0.16 +0.6 1,062,020 + AO356_04725 0.16 +0.6 1,062,021 - AO356_04725 0.16 -0.0 1,062,021 - AO356_04725 0.16 -0.4 1,062,045 + AO356_04725 0.23 -1.9 1,062,046 - AO356_04725 0.23 +0.1 1,062,046 - AO356_04725 0.23 +0.9 1,062,073 + AO356_04725 0.30 -0.9 1,062,073 + AO356_04725 0.30 +0.3 1,062,074 - AO356_04725 0.31 +0.9 1,062,074 - AO356_04725 0.31 -0.1 1,062,086 + AO356_04725 0.34 -1.7 1,062,101 - AO356_04725 0.38 +1.4 1,062,101 - AO356_04725 0.38 +0.1 1,062,101 - AO356_04725 0.38 -0.6 1,062,102 + AO356_04725 0.38 +0.8 1,062,106 - AO356_04725 0.39 +0.2 1,062,141 - AO356_04725 0.49 +2.2 1,062,180 + AO356_04725 0.60 +1.2 1,062,180 + AO356_04725 0.60 +0.2 1,062,180 + AO356_04725 0.60 +1.5 1,062,181 - AO356_04725 0.60 +1.4 1,062,181 - AO356_04725 0.60 +1.2 1,062,181 - AO356_04725 0.60 +1.3 1,062,290 + -1.8 1,062,290 + -0.4 1,062,291 - -0.4 1,062,291 - +0.3 1,062,613 + AO356_04730 0.64 +0.4 1,062,613 + AO356_04730 0.64 +0.1 1,062,613 + AO356_04730 0.64 -0.4 1,062,679 + AO356_04730 0.80 +1.7 1,062,679 + AO356_04730 0.80 +0.3 1,062,679 + AO356_04730 0.80 +0.3 1,062,679 + AO356_04730 0.80 +0.6 1,062,679 + AO356_04730 0.80 -0.1 1,062,679 + AO356_04730 0.80 -0.8 1,062,680 - AO356_04730 0.80 +1.2 1,062,680 - AO356_04730 0.80 -0.1 1,062,680 - AO356_04730 0.80 -0.3 1,062,680 - AO356_04730 0.80 +0.1 1,062,680 - AO356_04730 0.80 +0.3 1,062,680 - AO356_04730 0.80 +0.3 1,062,680 - AO356_04730 0.80 +1.2 1,062,743 + +0.4 1,062,743 + -0.5 1,062,744 - +0.6 1,062,744 - +0.9 1,062,744 - +0.1 1,062,798 + +0.0 1,062,809 + +0.5 1,062,809 + -0.5 1,062,810 - -2.0 1,062,810 - -1.0 1,062,810 - -0.4 1,062,826 + -0.2 1,062,827 - -1.9
Or see this region's nucleotide sequence