Experiment: Urea (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_04530 and AO356_04535 are separated by 315 nucleotides AO356_04535 and AO356_04540 are separated by 10 nucleotides AO356_04540 and AO356_04545 are separated by 131 nucleotides
AO356_04530: AO356_04530 - 4-hydroxy-tetrahydrodipicolinate synthase, at 1,022,531 to 1,023,409
_04530
AO356_04535: AO356_04535 - glycine cleavage system protein R, at 1,023,725 to 1,024,285
_04535
AO356_04540: AO356_04540 - peroxiredoxin, at 1,024,296 to 1,024,769
_04540
AO356_04545: AO356_04545 - permease, at 1,024,901 to 1,025,971
_04545
Position (kb)
1024
1025 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1023.477 kb on + strand at 1023.477 kb on + strand at 1023.477 kb on + strand at 1023.477 kb on + strand at 1023.478 kb on - strand at 1023.478 kb on - strand at 1023.478 kb on - strand at 1023.478 kb on - strand at 1023.478 kb on - strand at 1023.478 kb on - strand at 1023.478 kb on - strand at 1023.478 kb on - strand at 1023.478 kb on - strand at 1023.505 kb on + strand at 1023.540 kb on + strand at 1023.540 kb on + strand at 1023.540 kb on + strand at 1023.541 kb on - strand at 1023.541 kb on - strand at 1023.713 kb on + strand at 1023.713 kb on + strand at 1023.760 kb on + strand at 1023.760 kb on + strand at 1023.760 kb on + strand at 1023.760 kb on + strand at 1023.761 kb on - strand at 1023.841 kb on - strand, within AO356_04535 at 1024.016 kb on + strand, within AO356_04535 at 1024.017 kb on - strand, within AO356_04535 at 1024.025 kb on + strand, within AO356_04535 at 1024.025 kb on + strand, within AO356_04535 at 1024.025 kb on + strand, within AO356_04535 at 1024.025 kb on + strand, within AO356_04535 at 1024.026 kb on - strand, within AO356_04535 at 1024.026 kb on - strand, within AO356_04535 at 1024.026 kb on - strand, within AO356_04535 at 1024.121 kb on + strand, within AO356_04535 at 1024.121 kb on + strand, within AO356_04535 at 1024.121 kb on + strand, within AO356_04535 at 1024.121 kb on + strand, within AO356_04535 at 1024.122 kb on - strand, within AO356_04535 at 1024.122 kb on - strand, within AO356_04535 at 1024.283 kb on + strand at 1024.283 kb on + strand at 1024.283 kb on + strand at 1024.283 kb on + strand at 1024.283 kb on + strand at 1024.283 kb on + strand at 1024.284 kb on - strand at 1024.284 kb on - strand at 1024.284 kb on - strand at 1024.284 kb on - strand at 1024.284 kb on - strand at 1024.284 kb on - strand at 1024.284 kb on - strand at 1024.284 kb on - strand at 1024.284 kb on - strand at 1024.398 kb on + strand, within AO356_04540 at 1024.398 kb on + strand, within AO356_04540 at 1024.398 kb on + strand, within AO356_04540 at 1024.398 kb on + strand, within AO356_04540 at 1024.398 kb on + strand, within AO356_04540 at 1024.398 kb on + strand, within AO356_04540 at 1024.398 kb on + strand, within AO356_04540 at 1024.398 kb on + strand, within AO356_04540 at 1024.399 kb on - strand, within AO356_04540 at 1024.399 kb on - strand, within AO356_04540 at 1024.399 kb on - strand, within AO356_04540 at 1024.404 kb on + strand, within AO356_04540 at 1024.405 kb on - strand, within AO356_04540 at 1024.461 kb on + strand, within AO356_04540 at 1024.461 kb on + strand, within AO356_04540 at 1024.638 kb on + strand, within AO356_04540 at 1024.638 kb on + strand, within AO356_04540 at 1024.639 kb on - strand, within AO356_04540 at 1024.639 kb on - strand, within AO356_04540 at 1024.786 kb on - strand at 1024.829 kb on + strand at 1024.840 kb on - strand at 1024.902 kb on + strand at 1024.902 kb on + strand at 1024.903 kb on - strand at 1025.134 kb on - strand, within AO356_04545 at 1025.134 kb on - strand, within AO356_04545 at 1025.211 kb on + strand, within AO356_04545 at 1025.211 kb on + strand, within AO356_04545 at 1025.212 kb on - strand, within AO356_04545 at 1025.259 kb on + strand, within AO356_04545 at 1025.260 kb on - strand, within AO356_04545 at 1025.260 kb on - strand, within AO356_04545 at 1025.289 kb on + strand, within AO356_04545 at 1025.289 kb on + strand, within AO356_04545 at 1025.289 kb on + strand, within AO356_04545 at 1025.289 kb on + strand, within AO356_04545 at 1025.289 kb on + strand, within AO356_04545 at 1025.289 kb on + strand, within AO356_04545 at 1025.289 kb on + strand, within AO356_04545 at 1025.290 kb on - strand, within AO356_04545 at 1025.290 kb on - strand, within AO356_04545 at 1025.290 kb on - strand, within AO356_04545 at 1025.290 kb on - strand, within AO356_04545 at 1025.290 kb on - strand, within AO356_04545 at 1025.337 kb on + strand, within AO356_04545 at 1025.337 kb on + strand, within AO356_04545 at 1025.338 kb on - strand, within AO356_04545 at 1025.403 kb on + strand, within AO356_04545 at 1025.403 kb on + strand, within AO356_04545 at 1025.478 kb on + strand, within AO356_04545 at 1025.478 kb on + strand, within AO356_04545 at 1025.478 kb on + strand, within AO356_04545 at 1025.479 kb on - strand, within AO356_04545 at 1025.479 kb on - strand, within AO356_04545 at 1025.621 kb on + strand, within AO356_04545 at 1025.622 kb on - strand, within AO356_04545 at 1025.630 kb on + strand, within AO356_04545 at 1025.630 kb on + strand, within AO356_04545 at 1025.630 kb on + strand, within AO356_04545 at 1025.630 kb on + strand, within AO356_04545 at 1025.631 kb on - strand, within AO356_04545 at 1025.631 kb on - strand, within AO356_04545 at 1025.631 kb on - strand, within AO356_04545 at 1025.712 kb on - strand, within AO356_04545 at 1025.720 kb on - strand, within AO356_04545 at 1025.720 kb on - strand, within AO356_04545 at 1025.720 kb on - strand, within AO356_04545
Per-strain Table
Position Strand Gene LocusTag Fraction Urea (N) remove 1,023,477 + -0.1 1,023,477 + +0.8 1,023,477 + -0.6 1,023,477 + -1.6 1,023,478 - -0.4 1,023,478 - +1.1 1,023,478 - -2.2 1,023,478 - -0.4 1,023,478 - -1.1 1,023,478 - -0.4 1,023,478 - -0.8 1,023,478 - +0.8 1,023,478 - -0.0 1,023,505 + +0.4 1,023,540 + -0.1 1,023,540 + -0.3 1,023,540 + -1.2 1,023,541 - -0.2 1,023,541 - -1.7 1,023,713 + +0.4 1,023,713 + +0.9 1,023,760 + -0.0 1,023,760 + -0.4 1,023,760 + -0.8 1,023,760 + -0.8 1,023,761 - -0.9 1,023,841 - AO356_04535 0.21 -0.3 1,024,016 + AO356_04535 0.52 -0.3 1,024,017 - AO356_04535 0.52 +0.2 1,024,025 + AO356_04535 0.53 -2.3 1,024,025 + AO356_04535 0.53 -0.0 1,024,025 + AO356_04535 0.53 -0.3 1,024,025 + AO356_04535 0.53 +0.2 1,024,026 - AO356_04535 0.54 -0.4 1,024,026 - AO356_04535 0.54 -1.3 1,024,026 - AO356_04535 0.54 -1.8 1,024,121 + AO356_04535 0.71 +0.4 1,024,121 + AO356_04535 0.71 -0.0 1,024,121 + AO356_04535 0.71 -0.1 1,024,121 + AO356_04535 0.71 +0.6 1,024,122 - AO356_04535 0.71 -1.7 1,024,122 - AO356_04535 0.71 -1.2 1,024,283 + -0.1 1,024,283 + +0.9 1,024,283 + +1.8 1,024,283 + -0.6 1,024,283 + -0.1 1,024,283 + -0.3 1,024,284 - +0.6 1,024,284 - -0.8 1,024,284 - +0.2 1,024,284 - -0.7 1,024,284 - -2.3 1,024,284 - -1.5 1,024,284 - +0.8 1,024,284 - +0.2 1,024,284 - -0.0 1,024,398 + AO356_04540 0.22 +0.8 1,024,398 + AO356_04540 0.22 +0.6 1,024,398 + AO356_04540 0.22 +1.1 1,024,398 + AO356_04540 0.22 -1.3 1,024,398 + AO356_04540 0.22 -0.2 1,024,398 + AO356_04540 0.22 +0.8 1,024,398 + AO356_04540 0.22 +0.6 1,024,398 + AO356_04540 0.22 +0.7 1,024,399 - AO356_04540 0.22 -1.1 1,024,399 - AO356_04540 0.22 +0.1 1,024,399 - AO356_04540 0.22 -0.3 1,024,404 + AO356_04540 0.23 +1.2 1,024,405 - AO356_04540 0.23 +0.6 1,024,461 + AO356_04540 0.35 +0.2 1,024,461 + AO356_04540 0.35 +0.3 1,024,638 + AO356_04540 0.72 +0.4 1,024,638 + AO356_04540 0.72 -0.8 1,024,639 - AO356_04540 0.72 -1.5 1,024,639 - AO356_04540 0.72 +0.8 1,024,786 - +0.3 1,024,829 + -1.2 1,024,840 - -0.2 1,024,902 + +1.0 1,024,902 + -0.4 1,024,903 - +0.4 1,025,134 - AO356_04545 0.22 -1.6 1,025,134 - AO356_04545 0.22 +1.2 1,025,211 + AO356_04545 0.29 -0.1 1,025,211 + AO356_04545 0.29 +0.4 1,025,212 - AO356_04545 0.29 -0.4 1,025,259 + AO356_04545 0.33 +0.4 1,025,260 - AO356_04545 0.34 -0.2 1,025,260 - AO356_04545 0.34 -0.1 1,025,289 + AO356_04545 0.36 -1.3 1,025,289 + AO356_04545 0.36 -1.1 1,025,289 + AO356_04545 0.36 +0.6 1,025,289 + AO356_04545 0.36 +0.8 1,025,289 + AO356_04545 0.36 -0.4 1,025,289 + AO356_04545 0.36 +0.9 1,025,289 + AO356_04545 0.36 +0.2 1,025,290 - AO356_04545 0.36 -0.2 1,025,290 - AO356_04545 0.36 -0.0 1,025,290 - AO356_04545 0.36 +0.1 1,025,290 - AO356_04545 0.36 -0.0 1,025,290 - AO356_04545 0.36 +0.6 1,025,337 + AO356_04545 0.41 -1.2 1,025,337 + AO356_04545 0.41 +1.0 1,025,338 - AO356_04545 0.41 +0.9 1,025,403 + AO356_04545 0.47 -0.2 1,025,403 + AO356_04545 0.47 -0.6 1,025,478 + AO356_04545 0.54 +0.6 1,025,478 + AO356_04545 0.54 +0.6 1,025,478 + AO356_04545 0.54 -0.6 1,025,479 - AO356_04545 0.54 +0.2 1,025,479 - AO356_04545 0.54 +0.2 1,025,621 + AO356_04545 0.67 +0.1 1,025,622 - AO356_04545 0.67 +1.9 1,025,630 + AO356_04545 0.68 -1.8 1,025,630 + AO356_04545 0.68 +1.6 1,025,630 + AO356_04545 0.68 +0.0 1,025,630 + AO356_04545 0.68 +0.3 1,025,631 - AO356_04545 0.68 -1.2 1,025,631 - AO356_04545 0.68 +0.2 1,025,631 - AO356_04545 0.68 +0.5 1,025,712 - AO356_04545 0.76 +0.5 1,025,720 - AO356_04545 0.76 +0.9 1,025,720 - AO356_04545 0.76 -1.0 1,025,720 - AO356_04545 0.76 +1.0
Or see this region's nucleotide sequence