Experiment: Urea (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_02670 and AO356_02675 are separated by 13 nucleotides AO356_02675 and AO356_02680 are separated by 24 nucleotides
AO356_02670: AO356_02670 - hypothetical protein, at 586,083 to 587,189
_02670
AO356_02675: AO356_02675 - cell invasion protein, at 587,203 to 588,300
_02675
AO356_02680: AO356_02680 - cell invasion protein SipB, at 588,325 to 590,094
_02680
Position (kb) 587
588
589 Strain fitness (log2 ratio) -1
0
1
2 at 586.276 kb on - strand, within AO356_02670 at 586.276 kb on - strand, within AO356_02670 at 586.289 kb on - strand, within AO356_02670 at 586.486 kb on + strand, within AO356_02670 at 586.534 kb on - strand, within AO356_02670 at 586.624 kb on + strand, within AO356_02670 at 586.646 kb on - strand, within AO356_02670 at 586.719 kb on + strand, within AO356_02670 at 586.719 kb on + strand, within AO356_02670 at 587.154 kb on + strand at 587.154 kb on + strand at 587.155 kb on - strand at 587.159 kb on + strand at 587.171 kb on + strand at 587.171 kb on + strand at 587.172 kb on - strand at 587.172 kb on - strand at 587.189 kb on + strand at 587.189 kb on + strand at 587.636 kb on + strand, within AO356_02675 at 587.636 kb on + strand, within AO356_02675 at 587.636 kb on + strand, within AO356_02675 at 587.637 kb on - strand, within AO356_02675 at 587.716 kb on - strand, within AO356_02675 at 588.288 kb on - strand at 588.291 kb on + strand at 588.291 kb on + strand at 588.291 kb on + strand at 588.292 kb on - strand at 588.292 kb on - strand at 588.292 kb on - strand at 588.303 kb on + strand at 588.303 kb on + strand at 588.303 kb on + strand at 588.304 kb on - strand at 588.304 kb on - strand at 588.307 kb on + strand at 588.307 kb on + strand at 588.308 kb on - strand at 588.426 kb on - strand at 588.426 kb on - strand at 588.481 kb on + strand at 588.907 kb on + strand, within AO356_02680 at 588.907 kb on + strand, within AO356_02680 at 588.907 kb on + strand, within AO356_02680 at 588.908 kb on - strand, within AO356_02680 at 588.922 kb on - strand, within AO356_02680 at 588.922 kb on - strand, within AO356_02680 at 588.923 kb on + strand, within AO356_02680 at 588.923 kb on + strand, within AO356_02680 at 588.923 kb on + strand, within AO356_02680 at 588.923 kb on + strand, within AO356_02680 at 588.924 kb on - strand, within AO356_02680 at 588.924 kb on - strand, within AO356_02680 at 588.924 kb on - strand, within AO356_02680 at 589.190 kb on + strand, within AO356_02680
Per-strain Table
Position Strand Gene LocusTag Fraction Urea (N) remove 586,276 - AO356_02670 0.17 +1.0 586,276 - AO356_02670 0.17 +0.1 586,289 - AO356_02670 0.19 +0.6 586,486 + AO356_02670 0.36 -1.0 586,534 - AO356_02670 0.41 +1.4 586,624 + AO356_02670 0.49 +0.3 586,646 - AO356_02670 0.51 +0.2 586,719 + AO356_02670 0.57 +0.8 586,719 + AO356_02670 0.57 +0.8 587,154 + +0.1 587,154 + +1.0 587,155 - +0.2 587,159 + +0.3 587,171 + -0.2 587,171 + +1.7 587,172 - +0.8 587,172 - -0.8 587,189 + +1.9 587,189 + -1.5 587,636 + AO356_02675 0.39 +1.6 587,636 + AO356_02675 0.39 +0.0 587,636 + AO356_02675 0.39 +0.7 587,637 - AO356_02675 0.40 +0.5 587,716 - AO356_02675 0.47 -0.8 588,288 - +0.5 588,291 + -1.0 588,291 + +0.8 588,291 + +0.5 588,292 - -0.9 588,292 - -0.4 588,292 - +0.4 588,303 + -0.2 588,303 + +0.7 588,303 + -0.3 588,304 - -0.8 588,304 - +0.5 588,307 + -0.2 588,307 + +0.2 588,308 - -0.1 588,426 - +0.0 588,426 - -0.0 588,481 + -0.0 588,907 + AO356_02680 0.33 -0.3 588,907 + AO356_02680 0.33 -0.4 588,907 + AO356_02680 0.33 +2.5 588,908 - AO356_02680 0.33 -0.8 588,922 - AO356_02680 0.34 +0.3 588,922 - AO356_02680 0.34 +0.3 588,923 + AO356_02680 0.34 +0.3 588,923 + AO356_02680 0.34 +0.8 588,923 + AO356_02680 0.34 +0.6 588,923 + AO356_02680 0.34 +1.2 588,924 - AO356_02680 0.34 -0.7 588,924 - AO356_02680 0.34 +1.0 588,924 - AO356_02680 0.34 +0.7 589,190 + AO356_02680 0.49 +0.1
Or see this region's nucleotide sequence