Strain Fitness in Shewanella loihica PV-4 around Shew_2691
Experiment: Phosphomycin 0.12 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
| Position | Strand | Gene | LocusTag | Fraction | Phosphomycin 0.12 mg/ml |
|---|---|---|---|---|---|
| remove | |||||
| 3,185,972 | - | Shew_2690 | 0.80 | +0.0 | |
| 3,186,213 | + | Shew_2690 | 0.90 | +0.1 | |
| 3,186,248 | - | +0.1 | |||
| 3,186,425 | + | +0.6 | |||
| 3,186,663 | - | -0.1 | |||
| 3,186,808 | + | -0.5 | |||
| 3,186,831 | - | +0.3 | |||
| 3,187,411 | + | -0.3 | |||
| 3,187,515 | + | +0.3 | |||
| 3,187,523 | - | +0.3 | |||
| 3,187,562 | - | -0.1 | |||
| 3,187,616 | + | +0.4 | |||
| 3,187,656 | - | Shew_2692 | 0.13 | +0.4 | |
| 3,187,799 | + | Shew_2692 | 0.31 | +0.7 | |
| 3,187,838 | + | Shew_2692 | 0.36 | -0.1 | |
| 3,187,848 | + | Shew_2692 | 0.37 | -0.1 | |
| 3,187,979 | - | Shew_2692 | 0.54 | +0.4 | |
| 3,188,116 | - | Shew_2692 | 0.71 | -0.7 | |
| 3,188,217 | - | Shew_2692 | 0.84 | -0.4 | |
| 3,188,241 | + | Shew_2692 | 0.87 | +0.0 | |
| 3,188,246 | + | Shew_2692 | 0.88 | +0.8 | |
| 3,188,254 | - | Shew_2692 | 0.89 | +0.1 |
Or see this region's nucleotide sequence