Strain Fitness in Shewanella loihica PV-4 around Shew_2374

Experiment: Phosphomycin 0.12 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_2373 and Shew_2374 are separated by 237 nucleotidesShew_2374 and Shew_2375 are separated by 63 nucleotides Shew_2373: Shew_2373 - DSBA oxidoreductase (RefSeq), at 2,775,015 to 2,775,647 _2373 Shew_2374: Shew_2374 - NAD-dependent epimerase/dehydratase (RefSeq), at 2,775,885 to 2,776,784 _2374 Shew_2375: Shew_2375 - metal dependent phosphohydrolase (RefSeq), at 2,776,848 to 2,778,071 _2375 Position (kb) 2775 2776 2777Strain fitness (log2 ratio) -1 0 1at 2774.984 kb on + strandat 2775.213 kb on - strand, within Shew_2373at 2775.316 kb on - strand, within Shew_2373at 2775.562 kb on + strand, within Shew_2373at 2775.570 kb on - strand, within Shew_2373at 2775.570 kb on - strand, within Shew_2373at 2775.853 kb on - strandat 2776.734 kb on - strandat 2776.910 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Phosphomycin 0.12 mg/ml
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2,774,984 + -1.6
2,775,213 - Shew_2373 0.31 +0.8
2,775,316 - Shew_2373 0.48 +0.6
2,775,562 + Shew_2373 0.86 -0.1
2,775,570 - Shew_2373 0.88 -0.7
2,775,570 - Shew_2373 0.88 +0.4
2,775,853 - +0.1
2,776,734 - +0.2
2,776,910 - +0.3

Or see this region's nucleotide sequence