Experiment: Phosphomycin 0.12 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_1263 and Shew_1264 overlap by 4 nucleotides Shew_1264 and Shew_1265 are separated by 72 nucleotides Shew_1265 and Shew_1266 are separated by 4 nucleotides
Shew_1263: Shew_1263 - hypothetical protein (RefSeq), at 1,461,001 to 1,461,984
_1263
Shew_1264: Shew_1264 - UvrD/REP helicase (RefSeq), at 1,461,981 to 1,464,017
_1264
Shew_1265: Shew_1265 - hypothetical protein (RefSeq), at 1,464,090 to 1,464,632
_1265
Shew_1266: Shew_1266 - XRE family transcriptional regulator (RefSeq), at 1,464,637 to 1,465,020
_1266
Position (kb)
1461
1462
1463
1464
1465 Strain fitness (log2 ratio)
-2
-1
0
1 at 1461.019 kb on + strand at 1461.066 kb on - strand at 1461.076 kb on - strand at 1461.577 kb on + strand, within Shew_1263 at 1461.579 kb on + strand, within Shew_1263 at 1461.663 kb on - strand, within Shew_1263 at 1461.844 kb on - strand, within Shew_1263 at 1461.925 kb on + strand at 1462.061 kb on - strand at 1462.082 kb on + strand at 1462.191 kb on + strand, within Shew_1264 at 1463.166 kb on - strand, within Shew_1264 at 1464.012 kb on - strand at 1464.307 kb on - strand, within Shew_1265 at 1464.825 kb on + strand, within Shew_1266
Per-strain Table
Position Strand Gene LocusTag Fraction Phosphomycin 0.12 mg/ml remove 1,461,019 + +0.1 1,461,066 - -0.9 1,461,076 - -0.7 1,461,577 + Shew_1263 0.59 +0.4 1,461,579 + Shew_1263 0.59 +0.3 1,461,663 - Shew_1263 0.67 +0.5 1,461,844 - Shew_1263 0.86 -1.1 1,461,925 + -0.4 1,462,061 - -1.8 1,462,082 + +0.1 1,462,191 + Shew_1264 0.10 -0.7 1,463,166 - Shew_1264 0.58 -1.9 1,464,012 - +0.2 1,464,307 - Shew_1265 0.40 -0.2 1,464,825 + Shew_1266 0.49 -1.3
Or see this region's nucleotide sequence