Experiment: Phosphomycin 0.12 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0833 and Shew_0834 are separated by 82 nucleotides Shew_0834 and Shew_0835 are separated by 145 nucleotides Shew_0835 and Shew_0836 are separated by 241 nucleotides Shew_0836 and Shew_0837 are separated by 25 nucleotides
Shew_0833: Shew_0833 - hypoxanthine-guanine phosphoribosyltransferase (RefSeq), at 955,682 to 956,248
_0833
Shew_0834: Shew_0834 - hypothetical protein (RefSeq), at 956,331 to 956,543
_0834
Shew_0835: Shew_0835 - peptidase M1, membrane alanine aminopeptidase (RefSeq), at 956,689 to 959,337
_0835
Shew_0836: Shew_0836 - membrane lipoprotein lipid attachment site (RefSeq), at 959,579 to 960,172
_0836
Shew_0837: Shew_0837 - TPR repeat-containing protein (RefSeq), at 960,198 to 961,607
_0837
Position (kb) 956
957
958
959
960 Strain fitness (log2 ratio) -2
-1
0
1
2 at 955.797 kb on + strand, within Shew_0833 at 956.214 kb on - strand at 956.293 kb on - strand at 956.329 kb on + strand at 956.455 kb on + strand, within Shew_0834 at 956.845 kb on - strand at 957.431 kb on + strand, within Shew_0835 at 957.453 kb on + strand, within Shew_0835 at 957.707 kb on + strand, within Shew_0835 at 957.707 kb on + strand, within Shew_0835 at 957.806 kb on - strand, within Shew_0835 at 957.841 kb on - strand, within Shew_0835 at 958.161 kb on + strand, within Shew_0835 at 958.161 kb on + strand, within Shew_0835 at 958.161 kb on + strand, within Shew_0835 at 958.169 kb on - strand, within Shew_0835 at 958.267 kb on + strand, within Shew_0835 at 958.343 kb on + strand, within Shew_0835 at 958.574 kb on + strand, within Shew_0835 at 958.755 kb on - strand, within Shew_0835 at 958.932 kb on + strand, within Shew_0835 at 959.103 kb on - strand at 959.146 kb on - strand at 959.146 kb on - strand at 959.171 kb on - strand at 959.198 kb on - strand at 959.275 kb on + strand at 959.297 kb on + strand at 959.397 kb on - strand at 959.992 kb on + strand, within Shew_0836 at 960.013 kb on - strand, within Shew_0836
Per-strain Table
Position Strand Gene LocusTag Fraction Phosphomycin 0.12 mg/ml remove 955,797 + Shew_0833 0.20 +0.4 956,214 - +1.9 956,293 - +0.4 956,329 + -0.3 956,455 + Shew_0834 0.58 +0.7 956,845 - -0.2 957,431 + Shew_0835 0.28 -0.0 957,453 + Shew_0835 0.29 +0.9 957,707 + Shew_0835 0.38 +2.5 957,707 + Shew_0835 0.38 -0.9 957,806 - Shew_0835 0.42 +1.1 957,841 - Shew_0835 0.43 +1.1 958,161 + Shew_0835 0.56 +0.1 958,161 + Shew_0835 0.56 +0.3 958,161 + Shew_0835 0.56 +1.2 958,169 - Shew_0835 0.56 +0.3 958,267 + Shew_0835 0.60 +0.8 958,343 + Shew_0835 0.62 -0.2 958,574 + Shew_0835 0.71 -0.7 958,755 - Shew_0835 0.78 +0.5 958,932 + Shew_0835 0.85 +0.3 959,103 - -0.2 959,146 - -0.7 959,146 - +0.4 959,171 - -2.2 959,198 - -0.1 959,275 + -1.9 959,297 + -0.4 959,397 - +1.2 959,992 + Shew_0836 0.70 -1.7 960,013 - Shew_0836 0.73 -2.7
Or see this region's nucleotide sequence