Experiment: Phosphomycin 0.12 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0386 and Shew_0387 overlap by 4 nucleotides Shew_0387 and Shew_0388 overlap by 20 nucleotides Shew_0388 and Shew_0389 are separated by 0 nucleotides Shew_0389 and Shew_0390 are separated by 4 nucleotides Shew_0390 and Shew_0391 overlap by 4 nucleotides
Shew_0386: Shew_0386 - fimbrial assembly family protein (RefSeq), at 437,133 to 437,738
_0386
Shew_0387: Shew_0387 - MSHA biogenesis protein MshJ (RefSeq), at 437,735 to 438,391
_0387
Shew_0388: Shew_0388 - MSHA biogenesis protein MshK (RefSeq), at 438,372 to 438,698
_0388
Shew_0389: Shew_0389 - pilus (MSHA type) biogenesis protein MshL (RefSeq), at 438,699 to 440,390
_0389
Shew_0390: Shew_0390 - MSHA biogenesis protein MshM (RefSeq), at 440,395 to 441,300
_0390
Shew_0391: Shew_0391 - TPR repeat-containing protein (RefSeq), at 441,297 to 442,457
_0391
Position (kb) 438
439
440
441 Strain fitness (log2 ratio) -1
0
1
2
3 at 437.874 kb on + strand, within Shew_0387 at 437.986 kb on + strand, within Shew_0387 at 438.177 kb on + strand, within Shew_0387 at 438.285 kb on - strand, within Shew_0387 at 438.300 kb on - strand, within Shew_0387 at 438.410 kb on + strand, within Shew_0388 at 438.415 kb on + strand, within Shew_0388 at 438.415 kb on + strand, within Shew_0388 at 438.415 kb on + strand, within Shew_0388 at 438.418 kb on - strand, within Shew_0388 at 438.418 kb on - strand, within Shew_0388 at 438.423 kb on - strand, within Shew_0388 at 438.453 kb on + strand, within Shew_0388 at 438.667 kb on + strand at 439.027 kb on - strand, within Shew_0389 at 439.065 kb on - strand, within Shew_0389 at 439.123 kb on + strand, within Shew_0389 at 439.157 kb on + strand, within Shew_0389 at 439.394 kb on + strand, within Shew_0389 at 439.394 kb on + strand, within Shew_0389 at 439.402 kb on - strand, within Shew_0389 at 439.402 kb on - strand, within Shew_0389 at 439.402 kb on - strand, within Shew_0389 at 439.406 kb on + strand, within Shew_0389 at 439.520 kb on + strand, within Shew_0389 at 439.528 kb on - strand, within Shew_0389 at 439.643 kb on + strand, within Shew_0389 at 439.753 kb on - strand, within Shew_0389 at 439.766 kb on - strand, within Shew_0389 at 439.816 kb on + strand, within Shew_0389 at 439.853 kb on + strand, within Shew_0389 at 440.000 kb on + strand, within Shew_0389 at 440.075 kb on - strand, within Shew_0389 at 440.280 kb on - strand at 440.342 kb on + strand at 440.846 kb on - strand, within Shew_0390 at 441.247 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Phosphomycin 0.12 mg/ml remove 437,874 + Shew_0387 0.21 +1.2 437,986 + Shew_0387 0.38 +1.4 438,177 + Shew_0387 0.67 +1.1 438,285 - Shew_0387 0.84 +0.6 438,300 - Shew_0387 0.86 +1.2 438,410 + Shew_0388 0.12 +0.2 438,415 + Shew_0388 0.13 -0.1 438,415 + Shew_0388 0.13 +0.8 438,415 + Shew_0388 0.13 +1.3 438,418 - Shew_0388 0.14 +1.5 438,418 - Shew_0388 0.14 -0.0 438,423 - Shew_0388 0.16 +1.6 438,453 + Shew_0388 0.25 +1.5 438,667 + +0.5 439,027 - Shew_0389 0.19 +0.0 439,065 - Shew_0389 0.22 +0.9 439,123 + Shew_0389 0.25 +0.5 439,157 + Shew_0389 0.27 +1.1 439,394 + Shew_0389 0.41 +1.3 439,394 + Shew_0389 0.41 +1.2 439,402 - Shew_0389 0.42 +0.9 439,402 - Shew_0389 0.42 +3.1 439,402 - Shew_0389 0.42 +1.5 439,406 + Shew_0389 0.42 +1.0 439,520 + Shew_0389 0.49 +0.9 439,528 - Shew_0389 0.49 +1.2 439,643 + Shew_0389 0.56 +0.7 439,753 - Shew_0389 0.62 +0.7 439,766 - Shew_0389 0.63 +0.3 439,816 + Shew_0389 0.66 +0.4 439,853 + Shew_0389 0.68 +0.1 440,000 + Shew_0389 0.77 +1.5 440,075 - Shew_0389 0.81 +0.6 440,280 - +1.0 440,342 + +0.9 440,846 - Shew_0390 0.50 +0.8 441,247 + +0.6
Or see this region's nucleotide sequence