Experiment: Succinic Acid; Light intensity 18 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A3639 and Rru_A3640 overlap by 16 nucleotides Rru_A3640 and Rru_A3641 are separated by 30 nucleotides Rru_A3641 and Rru_A3642 are separated by 201 nucleotides
Rru_A3639: Rru_A3639 - Putative oxygen-independent coproporphyrinogen III oxidase (NCBI), at 4,180,213 to 4,181,457
_A3639
Rru_A3640: Rru_A3640 - Ham1-like protein (NCBI), at 4,181,442 to 4,182,047
_A3640
Rru_A3641: Rru_A3641 - Ribonuclease PH (NCBI), at 4,182,078 to 4,182,800
_A3641
Rru_A3642: Rru_A3642 - Negative regulator of class I heat shock protein (NCBI), at 4,183,002 to 4,184,060
_A3642
Position (kb) 4182
4183 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 4181.342 kb on + strand at 4181.343 kb on - strand at 4181.378 kb on + strand at 4181.717 kb on + strand, within Rru_A3640 at 4181.774 kb on - strand, within Rru_A3640 at 4182.079 kb on + strand at 4182.272 kb on - strand, within Rru_A3641 at 4182.272 kb on - strand, within Rru_A3641 at 4182.272 kb on - strand, within Rru_A3641 at 4182.389 kb on - strand, within Rru_A3641 at 4182.614 kb on - strand, within Rru_A3641 at 4182.614 kb on - strand, within Rru_A3641 at 4182.847 kb on + strand at 4182.847 kb on + strand at 4182.848 kb on - strand at 4182.939 kb on + strand at 4182.975 kb on - strand at 4183.084 kb on - strand at 4183.084 kb on - strand at 4183.570 kb on - strand, within Rru_A3642
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 18 uM remove 4,181,342 + -1.4 4,181,343 - +0.0 4,181,378 + -0.7 4,181,717 + Rru_A3640 0.45 +0.0 4,181,774 - Rru_A3640 0.55 +0.5 4,182,079 + +0.0 4,182,272 - Rru_A3641 0.27 -1.1 4,182,272 - Rru_A3641 0.27 -1.2 4,182,272 - Rru_A3641 0.27 -1.4 4,182,389 - Rru_A3641 0.43 +0.0 4,182,614 - Rru_A3641 0.74 +4.0 4,182,614 - Rru_A3641 0.74 +4.6 4,182,847 + -1.0 4,182,847 + -2.2 4,182,848 - +0.7 4,182,939 + +2.5 4,182,975 - +0.0 4,183,084 - +0.0 4,183,084 - -0.6 4,183,570 - Rru_A3642 0.54 +0.0
Or see this region's nucleotide sequence