Experiment: Succinic Acid; Light intensity 18 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A3586 and Rru_A3587 are separated by 114 nucleotides Rru_A3587 and Rru_A3588 are separated by 464 nucleotides
Rru_A3586: Rru_A3586 - Peptidoglycan-binding LysM (NCBI), at 4,129,234 to 4,130,292
_A3586
Rru_A3587: Rru_A3587 - hypothetical protein (NCBI), at 4,130,407 to 4,131,249
_A3587
Rru_A3588: Rru_A3588 - Cytochrome B561 (NCBI), at 4,131,714 to 4,132,463
_A3588
Position (kb) 4130
4131
4132 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6 at 4129.527 kb on + strand, within Rru_A3586 at 4129.527 kb on + strand, within Rru_A3586 at 4129.527 kb on + strand, within Rru_A3586 at 4129.527 kb on + strand, within Rru_A3586 at 4129.528 kb on - strand, within Rru_A3586 at 4129.530 kb on - strand, within Rru_A3586 at 4129.530 kb on - strand, within Rru_A3586 at 4129.612 kb on - strand, within Rru_A3586 at 4129.620 kb on - strand, within Rru_A3586 at 4129.620 kb on - strand, within Rru_A3586 at 4129.682 kb on + strand, within Rru_A3586 at 4129.682 kb on + strand, within Rru_A3586 at 4129.683 kb on - strand, within Rru_A3586 at 4130.053 kb on - strand, within Rru_A3586 at 4130.328 kb on + strand at 4130.329 kb on - strand at 4130.329 kb on - strand at 4130.329 kb on - strand at 4130.512 kb on - strand, within Rru_A3587 at 4130.512 kb on - strand, within Rru_A3587 at 4130.512 kb on - strand, within Rru_A3587 at 4130.601 kb on + strand, within Rru_A3587 at 4131.284 kb on + strand at 4131.284 kb on + strand at 4131.284 kb on + strand at 4131.284 kb on + strand at 4131.285 kb on - strand at 4131.288 kb on + strand at 4131.289 kb on - strand at 4131.560 kb on - strand at 4131.710 kb on + strand at 4131.710 kb on + strand at 4131.711 kb on - strand at 4131.711 kb on - strand at 4131.905 kb on + strand, within Rru_A3588 at 4131.905 kb on + strand, within Rru_A3588 at 4131.905 kb on + strand, within Rru_A3588 at 4131.905 kb on + strand, within Rru_A3588 at 4131.906 kb on - strand, within Rru_A3588 at 4131.906 kb on - strand, within Rru_A3588 at 4131.942 kb on + strand, within Rru_A3588 at 4131.942 kb on + strand, within Rru_A3588 at 4132.023 kb on + strand, within Rru_A3588 at 4132.024 kb on - strand, within Rru_A3588 at 4132.024 kb on - strand, within Rru_A3588 at 4132.220 kb on + strand, within Rru_A3588 at 4132.220 kb on + strand, within Rru_A3588 at 4132.220 kb on + strand, within Rru_A3588 at 4132.220 kb on + strand, within Rru_A3588 at 4132.220 kb on + strand, within Rru_A3588 at 4132.220 kb on + strand, within Rru_A3588 at 4132.221 kb on - strand, within Rru_A3588 at 4132.221 kb on - strand, within Rru_A3588 at 4132.221 kb on - strand, within Rru_A3588 at 4132.238 kb on + strand, within Rru_A3588 at 4132.239 kb on - strand, within Rru_A3588 at 4132.239 kb on - strand, within Rru_A3588
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 18 uM remove 4,129,527 + Rru_A3586 0.28 +0.0 4,129,527 + Rru_A3586 0.28 -1.6 4,129,527 + Rru_A3586 0.28 -1.0 4,129,527 + Rru_A3586 0.28 +0.0 4,129,528 - Rru_A3586 0.28 -1.6 4,129,530 - Rru_A3586 0.28 +0.2 4,129,530 - Rru_A3586 0.28 -2.4 4,129,612 - Rru_A3586 0.36 -0.7 4,129,620 - Rru_A3586 0.36 +0.0 4,129,620 - Rru_A3586 0.36 -1.2 4,129,682 + Rru_A3586 0.42 -1.0 4,129,682 + Rru_A3586 0.42 +0.0 4,129,683 - Rru_A3586 0.42 -0.4 4,130,053 - Rru_A3586 0.77 -1.0 4,130,328 + +1.1 4,130,329 - +1.9 4,130,329 - +0.0 4,130,329 - +5.0 4,130,512 - Rru_A3587 0.12 +0.1 4,130,512 - Rru_A3587 0.12 +0.0 4,130,512 - Rru_A3587 0.12 -1.3 4,130,601 + Rru_A3587 0.23 -2.0 4,131,284 + -0.4 4,131,284 + +4.2 4,131,284 + +0.0 4,131,284 + +1.9 4,131,285 - +0.5 4,131,288 + -1.0 4,131,289 - -1.0 4,131,560 - +0.5 4,131,710 + +1.3 4,131,710 + -0.9 4,131,711 - -0.7 4,131,711 - +6.4 4,131,905 + Rru_A3588 0.25 +0.9 4,131,905 + Rru_A3588 0.25 +0.0 4,131,905 + Rru_A3588 0.25 -0.8 4,131,905 + Rru_A3588 0.25 +0.0 4,131,906 - Rru_A3588 0.26 +0.0 4,131,906 - Rru_A3588 0.26 +3.8 4,131,942 + Rru_A3588 0.30 -0.5 4,131,942 + Rru_A3588 0.30 +5.6 4,132,023 + Rru_A3588 0.41 -1.0 4,132,024 - Rru_A3588 0.41 +3.0 4,132,024 - Rru_A3588 0.41 -0.2 4,132,220 + Rru_A3588 0.67 +1.0 4,132,220 + Rru_A3588 0.67 +2.5 4,132,220 + Rru_A3588 0.67 +1.8 4,132,220 + Rru_A3588 0.67 +1.8 4,132,220 + Rru_A3588 0.67 +0.3 4,132,220 + Rru_A3588 0.67 +1.3 4,132,221 - Rru_A3588 0.68 +1.2 4,132,221 - Rru_A3588 0.68 -1.3 4,132,221 - Rru_A3588 0.68 +0.8 4,132,238 + Rru_A3588 0.70 +2.6 4,132,239 - Rru_A3588 0.70 +0.0 4,132,239 - Rru_A3588 0.70 +1.6
Or see this region's nucleotide sequence