Experiment: Succinic Acid; Light intensity 18 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A2491 and Rru_A2492 are separated by 7 nucleotides Rru_A2492 and Rru_A2493 overlap by 4 nucleotides
Rru_A2491: Rru_A2491 - Major facilitator superfamily MFS_1 (NCBI), at 2,896,793 to 2,898,010
_A2491
Rru_A2492: Rru_A2492 - Glycosyl transferase, group 1 (NCBI), at 2,898,018 to 2,899,133
_A2492
Rru_A2493: Rru_A2493 - Glycosyl transferase, group 1 (NCBI), at 2,899,130 to 2,900,191
_A2493
Position (kb)
2898
2899
2900 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4
5
6 at 2897.154 kb on - strand, within Rru_A2491 at 2897.294 kb on + strand, within Rru_A2491 at 2897.294 kb on + strand, within Rru_A2491 at 2897.294 kb on + strand, within Rru_A2491 at 2897.295 kb on - strand, within Rru_A2491 at 2897.318 kb on + strand, within Rru_A2491 at 2897.373 kb on - strand, within Rru_A2491 at 2897.441 kb on + strand, within Rru_A2491 at 2897.442 kb on - strand, within Rru_A2491 at 2897.642 kb on + strand, within Rru_A2491 at 2897.642 kb on + strand, within Rru_A2491 at 2897.642 kb on + strand, within Rru_A2491 at 2897.643 kb on - strand, within Rru_A2491 at 2897.643 kb on - strand, within Rru_A2491 at 2897.672 kb on + strand, within Rru_A2491 at 2897.673 kb on - strand, within Rru_A2491 at 2897.712 kb on - strand, within Rru_A2491 at 2897.714 kb on - strand, within Rru_A2491 at 2897.714 kb on - strand, within Rru_A2491 at 2897.759 kb on + strand, within Rru_A2491 at 2897.760 kb on - strand, within Rru_A2491 at 2897.760 kb on - strand, within Rru_A2491 at 2898.016 kb on + strand at 2898.019 kb on + strand at 2898.019 kb on + strand at 2898.019 kb on + strand at 2898.019 kb on + strand at 2898.020 kb on - strand at 2898.727 kb on + strand, within Rru_A2492 at 2898.728 kb on - strand, within Rru_A2492 at 2898.728 kb on - strand, within Rru_A2492 at 2898.728 kb on - strand, within Rru_A2492 at 2898.989 kb on - strand, within Rru_A2492 at 2898.989 kb on - strand, within Rru_A2492 at 2898.989 kb on - strand, within Rru_A2492 at 2899.203 kb on + strand at 2899.203 kb on + strand at 2899.204 kb on - strand at 2899.204 kb on - strand at 2899.461 kb on + strand, within Rru_A2493 at 2899.645 kb on - strand, within Rru_A2493 at 2899.738 kb on + strand, within Rru_A2493 at 2899.738 kb on + strand, within Rru_A2493 at 2899.738 kb on + strand, within Rru_A2493 at 2899.739 kb on - strand, within Rru_A2493
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 18 uM remove 2,897,154 - Rru_A2491 0.30 -1.2 2,897,294 + Rru_A2491 0.41 -1.6 2,897,294 + Rru_A2491 0.41 -0.1 2,897,294 + Rru_A2491 0.41 -2.1 2,897,295 - Rru_A2491 0.41 -0.1 2,897,318 + Rru_A2491 0.43 -0.1 2,897,373 - Rru_A2491 0.48 -0.1 2,897,441 + Rru_A2491 0.53 +0.5 2,897,442 - Rru_A2491 0.53 -0.5 2,897,642 + Rru_A2491 0.70 -0.1 2,897,642 + Rru_A2491 0.70 +3.1 2,897,642 + Rru_A2491 0.70 +6.5 2,897,643 - Rru_A2491 0.70 -0.5 2,897,643 - Rru_A2491 0.70 +0.5 2,897,672 + Rru_A2491 0.72 -0.1 2,897,673 - Rru_A2491 0.72 +3.6 2,897,712 - Rru_A2491 0.75 +2.5 2,897,714 - Rru_A2491 0.76 -0.2 2,897,714 - Rru_A2491 0.76 -0.1 2,897,759 + Rru_A2491 0.79 +1.3 2,897,760 - Rru_A2491 0.79 -0.1 2,897,760 - Rru_A2491 0.79 -0.1 2,898,016 + +0.5 2,898,019 + -1.6 2,898,019 + +3.4 2,898,019 + -2.0 2,898,019 + -1.7 2,898,020 - -0.0 2,898,727 + Rru_A2492 0.64 -2.0 2,898,728 - Rru_A2492 0.64 -0.1 2,898,728 - Rru_A2492 0.64 +0.0 2,898,728 - Rru_A2492 0.64 +0.4 2,898,989 - Rru_A2492 0.87 -0.1 2,898,989 - Rru_A2492 0.87 -0.1 2,898,989 - Rru_A2492 0.87 -0.1 2,899,203 + -0.1 2,899,203 + -0.1 2,899,204 - -0.1 2,899,204 - -0.1 2,899,461 + Rru_A2493 0.31 -0.1 2,899,645 - Rru_A2493 0.48 -1.1 2,899,738 + Rru_A2493 0.57 +1.2 2,899,738 + Rru_A2493 0.57 -1.1 2,899,738 + Rru_A2493 0.57 -0.1 2,899,739 - Rru_A2493 0.57 -0.1
Or see this region's nucleotide sequence