Strain Fitness in Rhodospirillum rubrum S1H around Rru_A2426

Experiment: Succinic Acid; Light intensity 18 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A2425 and Rru_A2426 are separated by 35 nucleotidesRru_A2426 and Rru_A2427 overlap by 4 nucleotidesRru_A2427 and Rru_A2428 are separated by 97 nucleotides Rru_A2425: Rru_A2425 - Peptidase M48 (NCBI), at 2,825,285 to 2,826,658 _A2425 Rru_A2426: Rru_A2426 - LrgA (NCBI), at 2,826,694 to 2,827,110 _A2426 Rru_A2427: Rru_A2427 - LrgB-like protein (NCBI), at 2,827,107 to 2,827,832 _A2427 Rru_A2428: Rru_A2428 - DSBA oxidoreductase (NCBI), at 2,827,930 to 2,828,697 _A2428 Position (kb) 2826 2827 2828Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6at 2826.657 kb on - strandat 2826.918 kb on + strand, within Rru_A2426at 2826.918 kb on + strand, within Rru_A2426at 2826.918 kb on + strand, within Rru_A2426at 2826.918 kb on + strand, within Rru_A2426at 2826.918 kb on + strand, within Rru_A2426at 2826.918 kb on + strand, within Rru_A2426at 2826.918 kb on + strand, within Rru_A2426at 2826.918 kb on + strand, within Rru_A2426at 2826.918 kb on + strand, within Rru_A2426at 2826.918 kb on + strand, within Rru_A2426at 2826.919 kb on - strand, within Rru_A2426at 2826.919 kb on - strand, within Rru_A2426at 2826.919 kb on - strand, within Rru_A2426at 2826.919 kb on - strand, within Rru_A2426at 2826.919 kb on - strand, within Rru_A2426at 2827.147 kb on - strandat 2827.147 kb on - strandat 2827.147 kb on - strandat 2827.147 kb on - strandat 2827.147 kb on - strandat 2827.194 kb on + strand, within Rru_A2427at 2827.305 kb on + strand, within Rru_A2427at 2827.305 kb on + strand, within Rru_A2427at 2827.314 kb on + strand, within Rru_A2427at 2827.314 kb on + strand, within Rru_A2427at 2827.314 kb on + strand, within Rru_A2427at 2827.315 kb on - strand, within Rru_A2427at 2827.315 kb on - strand, within Rru_A2427at 2827.315 kb on - strand, within Rru_A2427

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 18 uM
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2,826,657 - -2.4
2,826,918 + Rru_A2426 0.54 +6.6
2,826,918 + Rru_A2426 0.54 -0.7
2,826,918 + Rru_A2426 0.54 -0.1
2,826,918 + Rru_A2426 0.54 +0.3
2,826,918 + Rru_A2426 0.54 -0.7
2,826,918 + Rru_A2426 0.54 +1.0
2,826,918 + Rru_A2426 0.54 -0.1
2,826,918 + Rru_A2426 0.54 -0.9
2,826,918 + Rru_A2426 0.54 -0.3
2,826,918 + Rru_A2426 0.54 -0.7
2,826,919 - Rru_A2426 0.54 -0.1
2,826,919 - Rru_A2426 0.54 -0.8
2,826,919 - Rru_A2426 0.54 +0.7
2,826,919 - Rru_A2426 0.54 -0.7
2,826,919 - Rru_A2426 0.54 -1.4
2,827,147 - +1.5
2,827,147 - -0.1
2,827,147 - -0.6
2,827,147 - -0.1
2,827,147 - +0.3
2,827,194 + Rru_A2427 0.12 +1.7
2,827,305 + Rru_A2427 0.27 -0.1
2,827,305 + Rru_A2427 0.27 +1.2
2,827,314 + Rru_A2427 0.29 -0.1
2,827,314 + Rru_A2427 0.29 -0.1
2,827,314 + Rru_A2427 0.29 +3.4
2,827,315 - Rru_A2427 0.29 +0.5
2,827,315 - Rru_A2427 0.29 -0.8
2,827,315 - Rru_A2427 0.29 -0.3

Or see this region's nucleotide sequence