Experiment: Succinic Acid; Light intensity 18 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A2089 and Rru_A2090 overlap by 1 nucleotides Rru_A2090 and Rru_A2091 are separated by 256 nucleotides Rru_A2091 and Rru_A2092 are separated by 62 nucleotides Rru_A2092 and Rru_A2093 are separated by 254 nucleotides
Rru_A2089: Rru_A2089 - Amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine (NCBI), at 2,417,532 to 2,418,224
_A2089
Rru_A2090: Rru_A2090 - ABC transporter component (NCBI), at 2,418,224 to 2,418,967
_A2090
Rru_A2091: Rru_A2091 - hypothetical protein (NCBI), at 2,419,224 to 2,419,481
_A2091
Rru_A2092: Rru_A2092 - hypothetical protein (NCBI), at 2,419,544 to 2,419,960
_A2092
Rru_A2093: Rru_A2093 - Methyltransferase FkbM (NCBI), at 2,420,215 to 2,420,973
_A2093
Position (kb)
2419
2420 Strain fitness (log2 ratio)
-1
0
1
2
3
4
5
6 at 2418.262 kb on + strand at 2418.263 kb on - strand at 2418.270 kb on - strand at 2418.409 kb on + strand, within Rru_A2090 at 2418.965 kb on + strand at 2419.294 kb on - strand, within Rru_A2091 at 2419.302 kb on + strand, within Rru_A2091 at 2419.303 kb on - strand, within Rru_A2091 at 2419.919 kb on + strand at 2419.919 kb on + strand at 2419.920 kb on - strand at 2419.920 kb on - strand at 2419.920 kb on - strand at 2419.927 kb on - strand at 2419.979 kb on + strand at 2419.981 kb on + strand at 2419.982 kb on - strand at 2420.025 kb on + strand at 2420.327 kb on - strand, within Rru_A2093 at 2420.375 kb on + strand, within Rru_A2093 at 2420.463 kb on + strand, within Rru_A2093
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 18 uM remove 2,418,262 + +1.0 2,418,263 - +2.1 2,418,270 - +0.7 2,418,409 + Rru_A2090 0.25 +4.1 2,418,965 + -0.6 2,419,294 - Rru_A2091 0.27 +2.1 2,419,302 + Rru_A2091 0.30 +1.9 2,419,303 - Rru_A2091 0.31 -0.1 2,419,919 + -0.1 2,419,919 + +6.0 2,419,920 - +0.2 2,419,920 - +0.6 2,419,920 - +6.6 2,419,927 - -0.5 2,419,979 + +5.0 2,419,981 + -1.0 2,419,982 - -0.1 2,420,025 + -1.6 2,420,327 - Rru_A2093 0.15 +0.9 2,420,375 + Rru_A2093 0.21 +4.6 2,420,463 + Rru_A2093 0.33 -0.7
Or see this region's nucleotide sequence