Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1434

Experiment: Succinic Acid; Light intensity 18 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A1433 and Rru_A1434 are separated by 4 nucleotidesRru_A1434 and 11438869 are separated by 177 nucleotides11438869 and 11581232 overlap by 31 nucleotides11581232 and 11723624 overlap by 31 nucleotides11723624 and 11438870 are separated by 0 nucleotides11438870 and 11581233 overlap by 33 nucleotides11581233 and 11723625 overlap by 33 nucleotides11723625 and 11438871 are separated by 0 nucleotides11438871 and 11581234 overlap by 31 nucleotides11581234 and 11723626 overlap by 31 nucleotides11723626 and 11438872 are separated by 0 nucleotides11438872 and 11581235 overlap by 36 nucleotides11581235 and 11723627 overlap by 36 nucleotides11723627 and 11438873 are separated by 0 nucleotides11438873 and 11581236 overlap by 31 nucleotides11581236 and 11723628 overlap by 31 nucleotides11723628 and 11438874 are separated by 0 nucleotides11438874 and 11581237 overlap by 33 nucleotides11581237 and 11723629 overlap by 33 nucleotides11723629 and 11438875 are separated by 0 nucleotides11438875 and 11581238 overlap by 31 nucleotides11581238 and 11723630 overlap by 31 nucleotides11723630 and 11438876 are separated by 0 nucleotides11438876 and 11581239 overlap by 33 nucleotides11581239 and 11723631 overlap by 33 nucleotides11723631 and 11438877 are separated by 0 nucleotides11438877 and 11581240 overlap by 31 nucleotides11581240 and 11723632 overlap by 31 nucleotides11723632 and 11438878 are separated by 0 nucleotides11438878 and 11581241 overlap by 35 nucleotides11581241 and 11723633 overlap by 35 nucleotides11723633 and 11438879 are separated by 0 nucleotides11438879 and 11581242 overlap by 31 nucleotides11581242 and 11723634 overlap by 31 nucleotides11723634 and 11438880 are separated by 0 nucleotides11438880 and 11581243 overlap by 33 nucleotides11581243 and 11723635 overlap by 33 nucleotides11723635 and 11438881 are separated by 0 nucleotides11438881 and 11581244 overlap by 31 nucleotides11581244 and 11723636 overlap by 31 nucleotides11723636 and 11438882 are separated by 0 nucleotides11438882 and 11581245 overlap by 34 nucleotides11581245 and 11723637 overlap by 34 nucleotides11723637 and 11438883 are separated by 0 nucleotides11438883 and 11581246 overlap by 31 nucleotides11581246 and 11723638 overlap by 31 nucleotides11723638 and 11438884 are separated by 0 nucleotides11438884 and 11581247 overlap by 35 nucleotides11581247 and 11723639 overlap by 35 nucleotides11723639 and 11438885 are separated by 0 nucleotides11438885 and 11581248 overlap by 31 nucleotides11581248 and 11723640 overlap by 31 nucleotides11723640 and 11438886 are separated by 0 nucleotides11438886 and 11581249 overlap by 34 nucleotides11581249 and 11723641 overlap by 34 nucleotides11723641 and 11438887 are separated by 0 nucleotides11438887 and 11581250 overlap by 31 nucleotides11581250 and 11723642 overlap by 31 nucleotides11723642 and 11438888 are separated by 0 nucleotides11438888 and 11581251 overlap by 33 nucleotides11581251 and 11723643 overlap by 33 nucleotides11723643 and 11438889 are separated by 0 nucleotides11438889 and 11581252 overlap by 31 nucleotides11581252 and 11723644 overlap by 31 nucleotides11723644 and 11438890 are separated by 0 nucleotides11438890 and 11581253 overlap by 36 nucleotides11581253 and 11723645 overlap by 36 nucleotides11723645 and 11438891 are separated by 0 nucleotides11438891 and 11581254 overlap by 31 nucleotides11581254 and 11723646 overlap by 31 nucleotides11723646 and 11438892 are separated by 0 nucleotides11438892 and 11581255 overlap by 32 nucleotides11581255 and 11723647 overlap by 32 nucleotides11723647 and 11438893 are separated by 0 nucleotides11438893 and 11581256 overlap by 31 nucleotides11581256 and 11723648 overlap by 31 nucleotides11723648 and 11438894 are separated by 0 nucleotides Rru_A1433: Rru_A1433 - L-aspartate oxidase (NCBI), at 1,691,241 to 1,692,839 _A1433 Rru_A1434: Rru_A1434 - Quinolinate synthetase A (NCBI), at 1,692,844 to 1,693,875 _A1434 11438869 - no description, at 1,694,053 to 1,694,083 11438869 11581232 - no description, at 1,694,053 to 1,694,083 11581232 11723624 - no description, at 1,694,053 to 1,694,083 11723624 11438870 - no description, at 1,694,084 to 1,694,116 11438870 11581233 - no description, at 1,694,084 to 1,694,116 11581233 11723625 - no description, at 1,694,084 to 1,694,116 11723625 11438871 - no description, at 1,694,117 to 1,694,147 11438871 11581234 - no description, at 1,694,117 to 1,694,147 11581234 11723626 - no description, at 1,694,117 to 1,694,147 11723626 11438872 - no description, at 1,694,148 to 1,694,183 11438872 11581235 - no description, at 1,694,148 to 1,694,183 11581235 11723627 - no description, at 1,694,148 to 1,694,183 11723627 11438873 - no description, at 1,694,184 to 1,694,214 11438873 11581236 - no description, at 1,694,184 to 1,694,214 11581236 11723628 - no description, at 1,694,184 to 1,694,214 11723628 11438874 - no description, at 1,694,215 to 1,694,247 11438874 11581237 - no description, at 1,694,215 to 1,694,247 11581237 11723629 - no description, at 1,694,215 to 1,694,247 11723629 11438875 - no description, at 1,694,248 to 1,694,278 11438875 11581238 - no description, at 1,694,248 to 1,694,278 11581238 11723630 - no description, at 1,694,248 to 1,694,278 11723630 11438876 - no description, at 1,694,279 to 1,694,311 11438876 11581239 - no description, at 1,694,279 to 1,694,311 11581239 11723631 - no description, at 1,694,279 to 1,694,311 11723631 11438877 - no description, at 1,694,312 to 1,694,342 11438877 11581240 - no description, at 1,694,312 to 1,694,342 11581240 11723632 - no description, at 1,694,312 to 1,694,342 11723632 11438878 - no description, at 1,694,343 to 1,694,377 11438878 11581241 - no description, at 1,694,343 to 1,694,377 11581241 11723633 - no description, at 1,694,343 to 1,694,377 11723633 11438879 - no description, at 1,694,378 to 1,694,408 11438879 11581242 - no description, at 1,694,378 to 1,694,408 11581242 11723634 - no description, at 1,694,378 to 1,694,408 11723634 11438880 - no description, at 1,694,409 to 1,694,441 11438880 11581243 - no description, at 1,694,409 to 1,694,441 11581243 11723635 - no description, at 1,694,409 to 1,694,441 11723635 11438881 - no description, at 1,694,442 to 1,694,472 11438881 11581244 - no description, at 1,694,442 to 1,694,472 11581244 11723636 - no description, at 1,694,442 to 1,694,472 11723636 11438882 - no description, at 1,694,473 to 1,694,506 11438882 11581245 - no description, at 1,694,473 to 1,694,506 11581245 11723637 - no description, at 1,694,473 to 1,694,506 11723637 11438883 - no description, at 1,694,507 to 1,694,537 11438883 11581246 - no description, at 1,694,507 to 1,694,537 11581246 11723638 - no description, at 1,694,507 to 1,694,537 11723638 11438884 - no description, at 1,694,538 to 1,694,572 11438884 11581247 - no description, at 1,694,538 to 1,694,572 11581247 11723639 - no description, at 1,694,538 to 1,694,572 11723639 11438885 - no description, at 1,694,573 to 1,694,603 11438885 11581248 - no description, at 1,694,573 to 1,694,603 11581248 11723640 - no description, at 1,694,573 to 1,694,603 11723640 11438886 - no description, at 1,694,604 to 1,694,637 11438886 11581249 - no description, at 1,694,604 to 1,694,637 11581249 11723641 - no description, at 1,694,604 to 1,694,637 11723641 11438887 - no description, at 1,694,638 to 1,694,668 11438887 11581250 - no description, at 1,694,638 to 1,694,668 11581250 11723642 - no description, at 1,694,638 to 1,694,668 11723642 11438888 - no description, at 1,694,669 to 1,694,701 11438888 11581251 - no description, at 1,694,669 to 1,694,701 11581251 11723643 - no description, at 1,694,669 to 1,694,701 11723643 11438889 - no description, at 1,694,702 to 1,694,732 11438889 11581252 - no description, at 1,694,702 to 1,694,732 11581252 11723644 - no description, at 1,694,702 to 1,694,732 11723644 11438890 - no description, at 1,694,733 to 1,694,768 11438890 11581253 - no description, at 1,694,733 to 1,694,768 11581253 11723645 - no description, at 1,694,733 to 1,694,768 11723645 11438891 - no description, at 1,694,769 to 1,694,799 11438891 11581254 - no description, at 1,694,769 to 1,694,799 11581254 11723646 - no description, at 1,694,769 to 1,694,799 11723646 11438892 - no description, at 1,694,800 to 1,694,831 11438892 11581255 - no description, at 1,694,800 to 1,694,831 11581255 11723647 - no description, at 1,694,800 to 1,694,831 11723647 11438893 - no description, at 1,694,832 to 1,694,862 11438893 11581256 - no description, at 1,694,832 to 1,694,862 11581256 11723648 - no description, at 1,694,832 to 1,694,862 11723648 11438894 - no description, at 1,694,863 to 1,694,898 11438894 11581257 - no description, at 1,694,863 to 1,694,898 11581257 11723649 - no description, at 1,694,863 to 1,694,898 11723649 Position (kb) 1692 1693 1694Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6at 1691.897 kb on - strand, within Rru_A1433at 1692.357 kb on + strand, within Rru_A1433at 1692.357 kb on + strand, within Rru_A1433at 1692.358 kb on - strand, within Rru_A1433at 1692.358 kb on - strand, within Rru_A1433at 1692.358 kb on - strand, within Rru_A1433at 1693.033 kb on - strand, within Rru_A1434at 1693.033 kb on - strand, within Rru_A1434at 1693.286 kb on + strand, within Rru_A1434at 1693.286 kb on + strand, within Rru_A1434at 1693.287 kb on - strand, within Rru_A1434at 1693.287 kb on - strand, within Rru_A1434at 1693.298 kb on + strand, within Rru_A1434at 1693.377 kb on + strand, within Rru_A1434at 1693.378 kb on - strand, within Rru_A1434at 1693.408 kb on - strand, within Rru_A1434at 1693.415 kb on + strand, within Rru_A1434at 1693.587 kb on + strand, within Rru_A1434at 1693.658 kb on + strand, within Rru_A1434at 1693.659 kb on - strand, within Rru_A1434at 1693.659 kb on - strand, within Rru_A1434at 1693.659 kb on - strand, within Rru_A1434at 1693.659 kb on - strand, within Rru_A1434at 1693.659 kb on - strand, within Rru_A1434at 1693.676 kb on + strand, within Rru_A1434at 1693.676 kb on + strand, within Rru_A1434at 1693.676 kb on + strand, within Rru_A1434at 1693.680 kb on + strand, within Rru_A1434at 1693.680 kb on + strand, within Rru_A1434at 1693.681 kb on - strand, within Rru_A1434at 1693.681 kb on - strand, within Rru_A1434at 1693.681 kb on - strand, within Rru_A1434at 1693.681 kb on - strand, within Rru_A1434at 1693.681 kb on - strand, within Rru_A1434at 1693.791 kb on - strandat 1694.027 kb on + strandat 1694.035 kb on + strandat 1694.035 kb on + strandat 1694.036 kb on - strandat 1694.036 kb on - strandat 1694.036 kb on - strandat 1694.112 kb on + strandat 1694.112 kb on + strandat 1694.113 kb on - strandat 1694.113 kb on - strandat 1694.113 kb on - strandat 1694.218 kb on - strandat 1694.424 kb on + strandat 1694.607 kb on - strandat 1694.767 kb on + strandat 1694.768 kb on - strandat 1694.768 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 18 uM
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1,691,897 - Rru_A1433 0.41 +0.1
1,692,357 + Rru_A1433 0.70 -1.5
1,692,357 + Rru_A1433 0.70 +1.5
1,692,358 - Rru_A1433 0.70 -1.9
1,692,358 - Rru_A1433 0.70 -0.1
1,692,358 - Rru_A1433 0.70 -1.1
1,693,033 - Rru_A1434 0.18 -1.5
1,693,033 - Rru_A1434 0.18 -0.1
1,693,286 + Rru_A1434 0.43 -0.5
1,693,286 + Rru_A1434 0.43 -2.2
1,693,287 - Rru_A1434 0.43 -2.4
1,693,287 - Rru_A1434 0.43 -1.5
1,693,298 + Rru_A1434 0.44 -0.1
1,693,377 + Rru_A1434 0.52 -2.4
1,693,378 - Rru_A1434 0.52 +5.8
1,693,408 - Rru_A1434 0.55 -1.4
1,693,415 + Rru_A1434 0.55 -0.4
1,693,587 + Rru_A1434 0.72 -2.1
1,693,658 + Rru_A1434 0.79 -1.6
1,693,659 - Rru_A1434 0.79 +0.8
1,693,659 - Rru_A1434 0.79 -2.8
1,693,659 - Rru_A1434 0.79 -0.1
1,693,659 - Rru_A1434 0.79 -1.4
1,693,659 - Rru_A1434 0.79 -0.1
1,693,676 + Rru_A1434 0.81 -0.1
1,693,676 + Rru_A1434 0.81 -3.6
1,693,676 + Rru_A1434 0.81 -0.1
1,693,680 + Rru_A1434 0.81 -0.3
1,693,680 + Rru_A1434 0.81 -0.5
1,693,681 - Rru_A1434 0.81 -0.1
1,693,681 - Rru_A1434 0.81 -1.3
1,693,681 - Rru_A1434 0.81 -1.1
1,693,681 - Rru_A1434 0.81 -0.1
1,693,681 - Rru_A1434 0.81 -2.3
1,693,791 - -2.9
1,694,027 + +0.2
1,694,035 + +2.7
1,694,035 + -0.9
1,694,036 - -0.4
1,694,036 - -0.1
1,694,036 - -0.1
1,694,112 + -2.1
1,694,112 + +2.9
1,694,113 - +1.5
1,694,113 - +0.7
1,694,113 - +0.9
1,694,218 - -0.1
1,694,424 + -0.1
1,694,607 - -0.3
1,694,767 + -1.0
1,694,768 - +1.1
1,694,768 - -1.1

Or see this region's nucleotide sequence