Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1117

Experiment: Succinic Acid; Light intensity 18 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A1115 and Rru_A1116 are separated by 144 nucleotidesRru_A1116 and Rru_A1117 are separated by 183 nucleotidesRru_A1117 and Rru_A1118 are separated by 8 nucleotides Rru_A1115: Rru_A1115 - Transcriptional Regulator, XRE family (NCBI), at 1,310,195 to 1,311,133 _A1115 Rru_A1116: Rru_A1116 - Transcriptional Regulator, TetR family (NCBI), at 1,311,278 to 1,311,832 _A1116 Rru_A1117: Rru_A1117 - Secretion protein HlyD (NCBI), at 1,312,016 to 1,313,119 _A1117 Rru_A1118: Rru_A1118 - Hydrophobe/amphiphile efflux-1 HAE1 (NCBI), at 1,313,128 to 1,316,286 _A1118 Position (kb) 1312 1313 1314Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6at 1311.164 kb on + strandat 1311.164 kb on + strandat 1311.165 kb on - strandat 1311.165 kb on - strandat 1311.165 kb on - strandat 1311.170 kb on + strandat 1311.226 kb on + strandat 1311.290 kb on - strandat 1311.298 kb on + strandat 1311.298 kb on + strandat 1311.299 kb on - strandat 1311.299 kb on - strandat 1311.310 kb on + strandat 1311.413 kb on + strand, within Rru_A1116at 1311.414 kb on - strand, within Rru_A1116at 1311.463 kb on + strand, within Rru_A1116at 1311.463 kb on + strand, within Rru_A1116at 1311.463 kb on + strand, within Rru_A1116at 1311.463 kb on + strand, within Rru_A1116at 1311.463 kb on + strand, within Rru_A1116at 1311.464 kb on - strand, within Rru_A1116at 1311.464 kb on - strand, within Rru_A1116at 1311.464 kb on - strand, within Rru_A1116at 1311.465 kb on + strand, within Rru_A1116at 1311.465 kb on + strand, within Rru_A1116at 1311.465 kb on + strand, within Rru_A1116at 1311.465 kb on + strand, within Rru_A1116at 1311.466 kb on - strand, within Rru_A1116at 1311.466 kb on - strand, within Rru_A1116at 1311.466 kb on - strand, within Rru_A1116at 1311.466 kb on - strand, within Rru_A1116at 1311.514 kb on + strand, within Rru_A1116at 1311.679 kb on + strand, within Rru_A1116at 1311.679 kb on + strand, within Rru_A1116at 1311.710 kb on + strand, within Rru_A1116at 1311.710 kb on + strand, within Rru_A1116at 1311.731 kb on + strand, within Rru_A1116at 1311.732 kb on - strand, within Rru_A1116at 1311.807 kb on + strandat 1311.807 kb on + strandat 1311.807 kb on + strandat 1311.807 kb on + strandat 1311.807 kb on + strandat 1311.807 kb on + strandat 1311.808 kb on - strandat 1311.808 kb on - strandat 1311.819 kb on - strandat 1311.831 kb on - strandat 1311.948 kb on + strandat 1311.948 kb on + strandat 1311.949 kb on - strandat 1311.949 kb on - strandat 1311.949 kb on - strandat 1311.955 kb on + strandat 1311.956 kb on - strandat 1312.156 kb on + strand, within Rru_A1117at 1312.156 kb on + strand, within Rru_A1117at 1312.283 kb on - strand, within Rru_A1117at 1312.318 kb on + strand, within Rru_A1117at 1312.340 kb on + strand, within Rru_A1117at 1312.340 kb on + strand, within Rru_A1117at 1312.431 kb on - strand, within Rru_A1117at 1312.431 kb on - strand, within Rru_A1117at 1312.431 kb on - strand, within Rru_A1117at 1312.432 kb on + strand, within Rru_A1117at 1312.432 kb on + strand, within Rru_A1117at 1312.432 kb on + strand, within Rru_A1117at 1312.433 kb on - strand, within Rru_A1117at 1312.433 kb on - strand, within Rru_A1117at 1312.676 kb on + strand, within Rru_A1117at 1312.677 kb on - strand, within Rru_A1117at 1312.790 kb on + strand, within Rru_A1117at 1312.790 kb on + strand, within Rru_A1117at 1312.790 kb on + strand, within Rru_A1117at 1312.790 kb on + strand, within Rru_A1117at 1312.790 kb on + strand, within Rru_A1117at 1312.790 kb on + strand, within Rru_A1117at 1312.790 kb on + strand, within Rru_A1117at 1312.790 kb on + strand, within Rru_A1117at 1312.790 kb on + strand, within Rru_A1117at 1312.790 kb on + strand, within Rru_A1117at 1312.791 kb on - strand, within Rru_A1117at 1312.791 kb on - strand, within Rru_A1117at 1312.791 kb on - strand, within Rru_A1117at 1312.791 kb on - strand, within Rru_A1117at 1312.791 kb on - strand, within Rru_A1117at 1312.791 kb on - strand, within Rru_A1117at 1312.791 kb on - strand, within Rru_A1117at 1312.791 kb on - strand, within Rru_A1117at 1312.791 kb on - strand, within Rru_A1117at 1312.886 kb on + strand, within Rru_A1117at 1312.886 kb on + strand, within Rru_A1117at 1312.886 kb on + strand, within Rru_A1117at 1312.886 kb on + strand, within Rru_A1117at 1312.887 kb on - strand, within Rru_A1117at 1312.887 kb on - strand, within Rru_A1117at 1312.887 kb on - strand, within Rru_A1117at 1313.117 kb on + strandat 1313.138 kb on + strandat 1313.139 kb on - strandat 1313.143 kb on - strandat 1313.263 kb on + strandat 1313.263 kb on + strandat 1313.272 kb on + strandat 1313.273 kb on - strandat 1313.299 kb on + strandat 1313.299 kb on + strandat 1313.299 kb on + strandat 1313.299 kb on + strandat 1313.299 kb on + strandat 1313.300 kb on - strandat 1313.300 kb on - strandat 1313.300 kb on - strandat 1313.300 kb on - strandat 1313.333 kb on + strandat 1313.333 kb on + strandat 1313.334 kb on - strandat 1313.334 kb on - strandat 1313.334 kb on - strandat 1313.356 kb on + strandat 1313.356 kb on + strandat 1313.508 kb on + strand, within Rru_A1118at 1313.543 kb on + strand, within Rru_A1118at 1313.543 kb on + strand, within Rru_A1118at 1313.543 kb on + strand, within Rru_A1118at 1313.544 kb on - strand, within Rru_A1118at 1313.544 kb on - strand, within Rru_A1118at 1313.544 kb on - strand, within Rru_A1118at 1313.596 kb on + strand, within Rru_A1118at 1313.596 kb on + strand, within Rru_A1118at 1313.610 kb on + strand, within Rru_A1118at 1313.610 kb on + strand, within Rru_A1118at 1313.610 kb on + strand, within Rru_A1118at 1313.610 kb on + strand, within Rru_A1118at 1313.611 kb on - strand, within Rru_A1118at 1313.611 kb on - strand, within Rru_A1118at 1313.624 kb on + strand, within Rru_A1118at 1313.625 kb on - strand, within Rru_A1118at 1313.734 kb on - strand, within Rru_A1118at 1313.784 kb on - strand, within Rru_A1118at 1313.951 kb on - strand, within Rru_A1118at 1313.951 kb on - strand, within Rru_A1118at 1314.094 kb on + strand, within Rru_A1118at 1314.094 kb on + strand, within Rru_A1118at 1314.094 kb on + strand, within Rru_A1118at 1314.094 kb on + strand, within Rru_A1118at 1314.095 kb on - strand, within Rru_A1118at 1314.095 kb on - strand, within Rru_A1118at 1314.095 kb on - strand, within Rru_A1118at 1314.095 kb on - strand, within Rru_A1118at 1314.106 kb on + strand, within Rru_A1118at 1314.106 kb on + strand, within Rru_A1118at 1314.106 kb on + strand, within Rru_A1118at 1314.106 kb on + strand, within Rru_A1118at 1314.106 kb on + strand, within Rru_A1118at 1314.107 kb on - strand, within Rru_A1118at 1314.107 kb on - strand, within Rru_A1118

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 18 uM
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1,311,164 + -0.3
1,311,164 + -0.0
1,311,165 - +2.3
1,311,165 - -0.0
1,311,165 - -0.0
1,311,170 + -1.0
1,311,226 + +0.3
1,311,290 - -1.4
1,311,298 + -0.0
1,311,298 + -0.6
1,311,299 - -0.0
1,311,299 - +3.6
1,311,310 + -0.0
1,311,413 + Rru_A1116 0.24 +1.5
1,311,414 - Rru_A1116 0.25 -1.1
1,311,463 + Rru_A1116 0.33 -1.5
1,311,463 + Rru_A1116 0.33 -0.0
1,311,463 + Rru_A1116 0.33 -0.3
1,311,463 + Rru_A1116 0.33 -0.0
1,311,463 + Rru_A1116 0.33 -1.3
1,311,464 - Rru_A1116 0.34 -2.2
1,311,464 - Rru_A1116 0.34 +2.9
1,311,464 - Rru_A1116 0.34 -0.7
1,311,465 + Rru_A1116 0.34 +0.3
1,311,465 + Rru_A1116 0.34 -1.8
1,311,465 + Rru_A1116 0.34 +2.0
1,311,465 + Rru_A1116 0.34 -0.8
1,311,466 - Rru_A1116 0.34 -0.0
1,311,466 - Rru_A1116 0.34 -0.5
1,311,466 - Rru_A1116 0.34 -0.6
1,311,466 - Rru_A1116 0.34 -0.0
1,311,514 + Rru_A1116 0.43 +0.6
1,311,679 + Rru_A1116 0.72 +3.3
1,311,679 + Rru_A1116 0.72 -0.0
1,311,710 + Rru_A1116 0.78 -0.0
1,311,710 + Rru_A1116 0.78 -0.0
1,311,731 + Rru_A1116 0.82 -2.0
1,311,732 - Rru_A1116 0.82 +1.2
1,311,807 + +2.2
1,311,807 + +0.8
1,311,807 + +0.6
1,311,807 + -1.6
1,311,807 + -0.0
1,311,807 + -1.0
1,311,808 - -0.0
1,311,808 - -0.5
1,311,819 - +2.6
1,311,831 - -0.0
1,311,948 + +0.2
1,311,948 + -0.2
1,311,949 - +1.0
1,311,949 - +0.3
1,311,949 - +3.6
1,311,955 + -0.0
1,311,956 - +5.9
1,312,156 + Rru_A1117 0.13 -0.2
1,312,156 + Rru_A1117 0.13 -0.8
1,312,283 - Rru_A1117 0.24 -0.3
1,312,318 + Rru_A1117 0.27 -1.9
1,312,340 + Rru_A1117 0.29 -0.0
1,312,340 + Rru_A1117 0.29 +1.1
1,312,431 - Rru_A1117 0.38 +0.9
1,312,431 - Rru_A1117 0.38 +3.3
1,312,431 - Rru_A1117 0.38 -0.0
1,312,432 + Rru_A1117 0.38 -0.3
1,312,432 + Rru_A1117 0.38 -2.0
1,312,432 + Rru_A1117 0.38 -0.0
1,312,433 - Rru_A1117 0.38 -1.0
1,312,433 - Rru_A1117 0.38 -0.0
1,312,676 + Rru_A1117 0.60 -0.0
1,312,677 - Rru_A1117 0.60 -2.0
1,312,790 + Rru_A1117 0.70 -0.0
1,312,790 + Rru_A1117 0.70 -2.2
1,312,790 + Rru_A1117 0.70 -0.3
1,312,790 + Rru_A1117 0.70 +0.0
1,312,790 + Rru_A1117 0.70 -1.8
1,312,790 + Rru_A1117 0.70 -0.1
1,312,790 + Rru_A1117 0.70 -1.0
1,312,790 + Rru_A1117 0.70 +0.9
1,312,790 + Rru_A1117 0.70 -0.0
1,312,790 + Rru_A1117 0.70 -0.0
1,312,791 - Rru_A1117 0.70 -0.0
1,312,791 - Rru_A1117 0.70 -0.4
1,312,791 - Rru_A1117 0.70 +1.0
1,312,791 - Rru_A1117 0.70 +1.1
1,312,791 - Rru_A1117 0.70 +2.8
1,312,791 - Rru_A1117 0.70 +2.0
1,312,791 - Rru_A1117 0.70 -0.5
1,312,791 - Rru_A1117 0.70 -1.2
1,312,791 - Rru_A1117 0.70 -0.2
1,312,886 + Rru_A1117 0.79 -0.8
1,312,886 + Rru_A1117 0.79 -2.1
1,312,886 + Rru_A1117 0.79 -1.0
1,312,886 + Rru_A1117 0.79 -2.0
1,312,887 - Rru_A1117 0.79 -0.0
1,312,887 - Rru_A1117 0.79 -0.0
1,312,887 - Rru_A1117 0.79 -0.6
1,313,117 + -0.0
1,313,138 + +0.1
1,313,139 - -0.0
1,313,143 - -0.0
1,313,263 + -0.0
1,313,263 + -0.0
1,313,272 + +0.2
1,313,273 - -0.1
1,313,299 + +1.4
1,313,299 + +1.6
1,313,299 + +1.2
1,313,299 + +2.3
1,313,299 + -0.8
1,313,300 - -1.1
1,313,300 - -0.0
1,313,300 - -0.0
1,313,300 - -0.2
1,313,333 + -0.9
1,313,333 + -0.0
1,313,334 - -0.3
1,313,334 - -0.6
1,313,334 - -0.5
1,313,356 + +1.9
1,313,356 + +0.9
1,313,508 + Rru_A1118 0.12 -0.0
1,313,543 + Rru_A1118 0.13 -1.0
1,313,543 + Rru_A1118 0.13 -1.1
1,313,543 + Rru_A1118 0.13 +0.4
1,313,544 - Rru_A1118 0.13 +4.2
1,313,544 - Rru_A1118 0.13 +6.3
1,313,544 - Rru_A1118 0.13 -0.0
1,313,596 + Rru_A1118 0.15 -0.9
1,313,596 + Rru_A1118 0.15 +1.3
1,313,610 + Rru_A1118 0.15 -1.0
1,313,610 + Rru_A1118 0.15 +0.6
1,313,610 + Rru_A1118 0.15 -0.3
1,313,610 + Rru_A1118 0.15 -1.4
1,313,611 - Rru_A1118 0.15 +0.3
1,313,611 - Rru_A1118 0.15 -0.6
1,313,624 + Rru_A1118 0.16 -0.0
1,313,625 - Rru_A1118 0.16 -0.0
1,313,734 - Rru_A1118 0.19 -0.0
1,313,784 - Rru_A1118 0.21 -0.0
1,313,951 - Rru_A1118 0.26 +0.3
1,313,951 - Rru_A1118 0.26 -0.5
1,314,094 + Rru_A1118 0.31 +3.3
1,314,094 + Rru_A1118 0.31 -0.0
1,314,094 + Rru_A1118 0.31 +0.2
1,314,094 + Rru_A1118 0.31 +1.4
1,314,095 - Rru_A1118 0.31 +0.6
1,314,095 - Rru_A1118 0.31 -0.6
1,314,095 - Rru_A1118 0.31 +5.3
1,314,095 - Rru_A1118 0.31 +0.0
1,314,106 + Rru_A1118 0.31 -1.6
1,314,106 + Rru_A1118 0.31 -1.2
1,314,106 + Rru_A1118 0.31 -0.0
1,314,106 + Rru_A1118 0.31 -1.6
1,314,106 + Rru_A1118 0.31 -1.9
1,314,107 - Rru_A1118 0.31 -2.8
1,314,107 - Rru_A1118 0.31 -0.0

Or see this region's nucleotide sequence