Experiment: Succinic Acid; Light intensity 18 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A1051 and Rru_A1052 are separated by 96 nucleotides Rru_A1052 and Rru_A1053 are separated by 17 nucleotides
Rru_A1051: Rru_A1051 - Phosphoribosylaminoimidazole carboxylase, ATPase subunit (NCBI), at 1,243,796 to 1,244,890
_A1051
Rru_A1052: Rru_A1052 - Response regulator receiver domain protein (CheY) (NCBI), at 1,244,987 to 1,245,748
_A1052
Rru_A1053: Rru_A1053 - chemotaxis sensory transducer (NCBI), at 1,245,766 to 1,247,328
_A1053
Position (kb) 1244
1245
1246 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6
7 at 1243.999 kb on - strand, within Rru_A1051 at 1244.479 kb on + strand, within Rru_A1051 at 1244.479 kb on + strand, within Rru_A1051 at 1244.480 kb on - strand, within Rru_A1051 at 1244.480 kb on - strand, within Rru_A1051 at 1244.480 kb on - strand, within Rru_A1051 at 1244.831 kb on + strand at 1244.831 kb on + strand at 1244.888 kb on + strand at 1244.947 kb on + strand at 1244.948 kb on - strand at 1245.002 kb on + strand at 1245.076 kb on + strand, within Rru_A1052 at 1245.146 kb on - strand, within Rru_A1052 at 1245.210 kb on - strand, within Rru_A1052 at 1245.458 kb on + strand, within Rru_A1052 at 1245.460 kb on + strand, within Rru_A1052 at 1245.460 kb on + strand, within Rru_A1052 at 1245.460 kb on + strand, within Rru_A1052 at 1245.460 kb on + strand, within Rru_A1052 at 1245.680 kb on + strand at 1245.681 kb on - strand at 1245.742 kb on + strand at 1245.742 kb on + strand at 1245.743 kb on - strand at 1245.767 kb on + strand at 1245.768 kb on - strand at 1245.768 kb on - strand at 1245.768 kb on - strand at 1245.769 kb on + strand at 1245.769 kb on + strand at 1245.769 kb on + strand at 1245.770 kb on - strand at 1245.770 kb on - strand at 1245.770 kb on - strand at 1245.770 kb on - strand at 1245.770 kb on - strand at 1245.770 kb on - strand at 1245.770 kb on - strand at 1245.770 kb on - strand at 1245.796 kb on - strand at 1245.796 kb on - strand at 1246.045 kb on - strand, within Rru_A1053 at 1246.045 kb on - strand, within Rru_A1053 at 1246.357 kb on + strand, within Rru_A1053 at 1246.357 kb on + strand, within Rru_A1053 at 1246.357 kb on + strand, within Rru_A1053 at 1246.357 kb on + strand, within Rru_A1053 at 1246.357 kb on + strand, within Rru_A1053 at 1246.357 kb on + strand, within Rru_A1053 at 1246.468 kb on - strand, within Rru_A1053 at 1246.485 kb on + strand, within Rru_A1053 at 1246.486 kb on - strand, within Rru_A1053 at 1246.556 kb on + strand, within Rru_A1053 at 1246.556 kb on + strand, within Rru_A1053 at 1246.556 kb on + strand, within Rru_A1053 at 1246.692 kb on + strand, within Rru_A1053 at 1246.692 kb on + strand, within Rru_A1053 at 1246.693 kb on - strand, within Rru_A1053 at 1246.693 kb on - strand, within Rru_A1053 at 1246.693 kb on - strand, within Rru_A1053
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 18 uM remove 1,243,999 - Rru_A1051 0.19 +0.0 1,244,479 + Rru_A1051 0.62 +0.0 1,244,479 + Rru_A1051 0.62 -1.6 1,244,480 - Rru_A1051 0.62 +0.0 1,244,480 - Rru_A1051 0.62 -1.0 1,244,480 - Rru_A1051 0.62 +0.0 1,244,831 + -1.0 1,244,831 + +0.0 1,244,888 + +0.0 1,244,947 + +0.3 1,244,948 - +0.0 1,245,002 + +0.0 1,245,076 + Rru_A1052 0.12 +0.0 1,245,146 - Rru_A1052 0.21 +0.0 1,245,210 - Rru_A1052 0.29 +0.1 1,245,458 + Rru_A1052 0.62 +2.8 1,245,460 + Rru_A1052 0.62 -0.8 1,245,460 + Rru_A1052 0.62 +0.2 1,245,460 + Rru_A1052 0.62 +0.0 1,245,460 + Rru_A1052 0.62 +1.2 1,245,680 + -0.9 1,245,681 - -1.0 1,245,742 + +4.2 1,245,742 + +2.1 1,245,743 - +0.5 1,245,767 + -1.3 1,245,768 - +5.3 1,245,768 - +2.2 1,245,768 - -0.6 1,245,769 + -0.6 1,245,769 + +0.0 1,245,769 + +0.0 1,245,770 - -1.0 1,245,770 - +7.3 1,245,770 - +0.8 1,245,770 - -0.3 1,245,770 - +1.9 1,245,770 - +2.3 1,245,770 - -0.2 1,245,770 - +0.1 1,245,796 - -1.2 1,245,796 - +0.0 1,246,045 - Rru_A1053 0.18 -1.1 1,246,045 - Rru_A1053 0.18 +0.0 1,246,357 + Rru_A1053 0.38 -1.9 1,246,357 + Rru_A1053 0.38 -0.0 1,246,357 + Rru_A1053 0.38 -0.3 1,246,357 + Rru_A1053 0.38 +1.1 1,246,357 + Rru_A1053 0.38 +1.7 1,246,357 + Rru_A1053 0.38 +0.0 1,246,468 - Rru_A1053 0.45 +0.0 1,246,485 + Rru_A1053 0.46 +0.0 1,246,486 - Rru_A1053 0.46 -1.0 1,246,556 + Rru_A1053 0.51 +5.2 1,246,556 + Rru_A1053 0.51 -0.7 1,246,556 + Rru_A1053 0.51 +0.0 1,246,692 + Rru_A1053 0.59 +1.5 1,246,692 + Rru_A1053 0.59 -0.5 1,246,693 - Rru_A1053 0.59 -1.0 1,246,693 - Rru_A1053 0.59 -0.9 1,246,693 - Rru_A1053 0.59 -0.7
Or see this region's nucleotide sequence