Experiment: Succinic Acid; Light intensity 18 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0763 and Rru_A0764 overlap by 1 nucleotides Rru_A0764 and Rru_A0765 are separated by 378 nucleotides
Rru_A0763: Rru_A0763 - Radical SAM (NCBI), at 896,962 to 898,026
_A0763
Rru_A0764: Rru_A0764 - HesB/YadR/YfhF (NCBI), at 898,026 to 898,340
_A0764
Rru_A0765: Rru_A0765 - hypothetical protein (NCBI), at 898,719 to 902,156
_A0765
Position (kb) 898
899 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6 at 897.058 kb on + strand at 897.058 kb on + strand at 897.058 kb on + strand at 897.058 kb on + strand at 897.058 kb on + strand at 897.058 kb on + strand at 897.059 kb on - strand at 897.059 kb on - strand at 897.059 kb on - strand at 897.059 kb on - strand at 897.061 kb on - strand at 897.181 kb on + strand, within Rru_A0763 at 897.181 kb on + strand, within Rru_A0763 at 897.181 kb on + strand, within Rru_A0763 at 897.182 kb on - strand, within Rru_A0763 at 897.208 kb on + strand, within Rru_A0763 at 897.209 kb on - strand, within Rru_A0763 at 897.217 kb on + strand, within Rru_A0763 at 897.438 kb on + strand, within Rru_A0763 at 897.438 kb on + strand, within Rru_A0763 at 897.514 kb on + strand, within Rru_A0763 at 897.514 kb on + strand, within Rru_A0763 at 897.515 kb on - strand, within Rru_A0763 at 897.664 kb on + strand, within Rru_A0763 at 897.665 kb on - strand, within Rru_A0763 at 897.665 kb on - strand, within Rru_A0763 at 897.688 kb on + strand, within Rru_A0763 at 897.689 kb on - strand, within Rru_A0763 at 897.760 kb on + strand, within Rru_A0763 at 897.761 kb on - strand, within Rru_A0763 at 897.761 kb on - strand, within Rru_A0763 at 897.794 kb on - strand, within Rru_A0763 at 897.897 kb on + strand, within Rru_A0763 at 897.898 kb on - strand, within Rru_A0763 at 897.898 kb on - strand, within Rru_A0763 at 898.052 kb on + strand at 898.052 kb on + strand at 898.052 kb on + strand at 898.052 kb on + strand at 898.052 kb on + strand at 898.053 kb on - strand at 898.053 kb on - strand at 898.053 kb on - strand at 898.053 kb on - strand at 898.053 kb on - strand at 898.053 kb on - strand at 898.165 kb on - strand, within Rru_A0764 at 898.165 kb on - strand, within Rru_A0764 at 898.165 kb on - strand, within Rru_A0764 at 898.165 kb on - strand, within Rru_A0764 at 898.173 kb on + strand, within Rru_A0764 at 898.173 kb on + strand, within Rru_A0764 at 898.173 kb on + strand, within Rru_A0764 at 898.338 kb on + strand at 898.339 kb on - strand at 898.374 kb on + strand at 898.374 kb on + strand at 898.374 kb on + strand at 898.374 kb on + strand at 898.374 kb on + strand at 898.374 kb on + strand at 898.375 kb on - strand at 898.375 kb on - strand at 898.375 kb on - strand at 898.375 kb on - strand at 898.375 kb on - strand at 898.453 kb on - strand at 898.453 kb on - strand at 898.513 kb on - strand at 898.654 kb on - strand at 898.654 kb on - strand at 898.654 kb on - strand at 898.695 kb on + strand at 898.696 kb on - strand at 898.696 kb on - strand at 898.696 kb on - strand at 898.696 kb on - strand at 898.696 kb on - strand at 898.696 kb on - strand at 898.736 kb on - strand at 898.877 kb on - strand at 899.147 kb on - strand, within Rru_A0765 at 899.147 kb on - strand, within Rru_A0765 at 899.147 kb on - strand, within Rru_A0765 at 899.152 kb on - strand, within Rru_A0765 at 899.152 kb on - strand, within Rru_A0765 at 899.213 kb on - strand, within Rru_A0765 at 899.213 kb on - strand, within Rru_A0765 at 899.294 kb on + strand, within Rru_A0765 at 899.305 kb on - strand, within Rru_A0765 at 899.305 kb on - strand, within Rru_A0765 at 899.305 kb on - strand, within Rru_A0765
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 18 uM remove 897,058 + +5.0 897,058 + +2.1 897,058 + +0.1 897,058 + +5.6 897,058 + -0.8 897,058 + +2.9 897,059 - +0.1 897,059 - +0.1 897,059 - +1.1 897,059 - -0.3 897,061 - +1.6 897,181 + Rru_A0763 0.21 +0.1 897,181 + Rru_A0763 0.21 +0.1 897,181 + Rru_A0763 0.21 -0.6 897,182 - Rru_A0763 0.21 +1.6 897,208 + Rru_A0763 0.23 +0.1 897,209 - Rru_A0763 0.23 +0.1 897,217 + Rru_A0763 0.24 -0.4 897,438 + Rru_A0763 0.45 +1.8 897,438 + Rru_A0763 0.45 +0.8 897,514 + Rru_A0763 0.52 +0.1 897,514 + Rru_A0763 0.52 +2.9 897,515 - Rru_A0763 0.52 -0.9 897,664 + Rru_A0763 0.66 -0.9 897,665 - Rru_A0763 0.66 +0.9 897,665 - Rru_A0763 0.66 +2.3 897,688 + Rru_A0763 0.68 -0.9 897,689 - Rru_A0763 0.68 +1.7 897,760 + Rru_A0763 0.75 -2.1 897,761 - Rru_A0763 0.75 -1.5 897,761 - Rru_A0763 0.75 -1.3 897,794 - Rru_A0763 0.78 +0.8 897,897 + Rru_A0763 0.88 -1.0 897,898 - Rru_A0763 0.88 -1.6 897,898 - Rru_A0763 0.88 +1.8 898,052 + -1.0 898,052 + +0.0 898,052 + -2.0 898,052 + +0.0 898,052 + -2.1 898,053 - +0.6 898,053 - -1.3 898,053 - +6.6 898,053 - +4.1 898,053 - +0.0 898,053 - -1.2 898,165 - Rru_A0764 0.44 -1.4 898,165 - Rru_A0764 0.44 +0.0 898,165 - Rru_A0764 0.44 +0.0 898,165 - Rru_A0764 0.44 +0.0 898,173 + Rru_A0764 0.47 -1.4 898,173 + Rru_A0764 0.47 -1.9 898,173 + Rru_A0764 0.47 +0.0 898,338 + +0.0 898,339 - +0.0 898,374 + -0.1 898,374 + +0.2 898,374 + +0.0 898,374 + -1.0 898,374 + -0.7 898,374 + -0.7 898,375 - -0.8 898,375 - -1.4 898,375 - -1.0 898,375 - -2.3 898,375 - +0.6 898,453 - +3.6 898,453 - -1.0 898,513 - -1.1 898,654 - +0.2 898,654 - +1.6 898,654 - +4.1 898,695 + +0.0 898,696 - +0.0 898,696 - +1.2 898,696 - +2.9 898,696 - +0.0 898,696 - -0.0 898,696 - +0.8 898,736 - -1.3 898,877 - -1.2 899,147 - Rru_A0765 0.12 -0.6 899,147 - Rru_A0765 0.12 -0.8 899,147 - Rru_A0765 0.12 +1.0 899,152 - Rru_A0765 0.13 +3.0 899,152 - Rru_A0765 0.13 +0.0 899,213 - Rru_A0765 0.14 +0.0 899,213 - Rru_A0765 0.14 +0.9 899,294 + Rru_A0765 0.17 +0.2 899,305 - Rru_A0765 0.17 +0.0 899,305 - Rru_A0765 0.17 +0.0 899,305 - Rru_A0765 0.17 +0.8
Or see this region's nucleotide sequence