Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0763

Experiment: Succinic Acid; Light intensity 18 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0762 and Rru_A0763 overlap by 4 nucleotidesRru_A0763 and Rru_A0764 overlap by 1 nucleotidesRru_A0764 and Rru_A0765 are separated by 378 nucleotides Rru_A0762: Rru_A0762 - Fe-S oxidoreductase (NCBI), at 895,511 to 896,965 _A0762 Rru_A0763: Rru_A0763 - Radical SAM (NCBI), at 896,962 to 898,026 _A0763 Rru_A0764: Rru_A0764 - HesB/YadR/YfhF (NCBI), at 898,026 to 898,340 _A0764 Rru_A0765: Rru_A0765 - hypothetical protein (NCBI), at 898,719 to 902,156 _A0765 Position (kb) 896 897 898 899Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6at 896.024 kb on - strand, within Rru_A0762at 896.024 kb on - strand, within Rru_A0762at 896.066 kb on + strand, within Rru_A0762at 896.066 kb on + strand, within Rru_A0762at 896.067 kb on - strand, within Rru_A0762at 896.150 kb on + strand, within Rru_A0762at 896.199 kb on - strand, within Rru_A0762at 896.225 kb on + strand, within Rru_A0762at 896.225 kb on + strand, within Rru_A0762at 896.245 kb on + strand, within Rru_A0762at 896.246 kb on - strand, within Rru_A0762at 896.253 kb on - strand, within Rru_A0762at 896.316 kb on - strand, within Rru_A0762at 896.316 kb on - strand, within Rru_A0762at 896.336 kb on + strand, within Rru_A0762at 896.381 kb on + strand, within Rru_A0762at 896.443 kb on + strand, within Rru_A0762at 896.443 kb on + strand, within Rru_A0762at 896.443 kb on + strand, within Rru_A0762at 896.443 kb on + strand, within Rru_A0762at 896.444 kb on - strand, within Rru_A0762at 896.444 kb on - strand, within Rru_A0762at 896.444 kb on - strand, within Rru_A0762at 896.462 kb on + strand, within Rru_A0762at 896.462 kb on + strand, within Rru_A0762at 896.462 kb on + strand, within Rru_A0762at 896.463 kb on - strand, within Rru_A0762at 896.603 kb on + strand, within Rru_A0762at 896.603 kb on + strand, within Rru_A0762at 896.604 kb on - strand, within Rru_A0762at 896.604 kb on - strand, within Rru_A0762at 896.625 kb on - strand, within Rru_A0762at 896.660 kb on + strand, within Rru_A0762at 896.661 kb on - strand, within Rru_A0762at 896.717 kb on + strand, within Rru_A0762at 896.717 kb on + strand, within Rru_A0762at 896.718 kb on - strand, within Rru_A0762at 896.718 kb on - strand, within Rru_A0762at 896.762 kb on + strand, within Rru_A0762at 897.058 kb on + strandat 897.058 kb on + strandat 897.058 kb on + strandat 897.058 kb on + strandat 897.058 kb on + strandat 897.058 kb on + strandat 897.059 kb on - strandat 897.059 kb on - strandat 897.059 kb on - strandat 897.059 kb on - strandat 897.061 kb on - strandat 897.181 kb on + strand, within Rru_A0763at 897.181 kb on + strand, within Rru_A0763at 897.181 kb on + strand, within Rru_A0763at 897.182 kb on - strand, within Rru_A0763at 897.208 kb on + strand, within Rru_A0763at 897.209 kb on - strand, within Rru_A0763at 897.217 kb on + strand, within Rru_A0763at 897.438 kb on + strand, within Rru_A0763at 897.438 kb on + strand, within Rru_A0763at 897.514 kb on + strand, within Rru_A0763at 897.514 kb on + strand, within Rru_A0763at 897.515 kb on - strand, within Rru_A0763at 897.664 kb on + strand, within Rru_A0763at 897.665 kb on - strand, within Rru_A0763at 897.665 kb on - strand, within Rru_A0763at 897.688 kb on + strand, within Rru_A0763at 897.689 kb on - strand, within Rru_A0763at 897.760 kb on + strand, within Rru_A0763at 897.761 kb on - strand, within Rru_A0763at 897.761 kb on - strand, within Rru_A0763at 897.794 kb on - strand, within Rru_A0763at 897.897 kb on + strand, within Rru_A0763at 897.898 kb on - strand, within Rru_A0763at 897.898 kb on - strand, within Rru_A0763at 898.052 kb on + strandat 898.052 kb on + strandat 898.052 kb on + strandat 898.052 kb on + strandat 898.052 kb on + strandat 898.053 kb on - strandat 898.053 kb on - strandat 898.053 kb on - strandat 898.053 kb on - strandat 898.053 kb on - strandat 898.053 kb on - strandat 898.165 kb on - strand, within Rru_A0764at 898.165 kb on - strand, within Rru_A0764at 898.165 kb on - strand, within Rru_A0764at 898.165 kb on - strand, within Rru_A0764at 898.173 kb on + strand, within Rru_A0764at 898.173 kb on + strand, within Rru_A0764at 898.173 kb on + strand, within Rru_A0764at 898.338 kb on + strandat 898.339 kb on - strandat 898.374 kb on + strandat 898.374 kb on + strandat 898.374 kb on + strandat 898.374 kb on + strandat 898.374 kb on + strandat 898.374 kb on + strandat 898.375 kb on - strandat 898.375 kb on - strandat 898.375 kb on - strandat 898.375 kb on - strandat 898.375 kb on - strandat 898.453 kb on - strandat 898.453 kb on - strandat 898.513 kb on - strandat 898.654 kb on - strandat 898.654 kb on - strandat 898.654 kb on - strandat 898.695 kb on + strandat 898.696 kb on - strandat 898.696 kb on - strandat 898.696 kb on - strandat 898.696 kb on - strandat 898.696 kb on - strandat 898.696 kb on - strandat 898.736 kb on - strandat 898.877 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 18 uM
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896,024 - Rru_A0762 0.35 -0.0
896,024 - Rru_A0762 0.35 -0.9
896,066 + Rru_A0762 0.38 +0.1
896,066 + Rru_A0762 0.38 -0.8
896,067 - Rru_A0762 0.38 +1.2
896,150 + Rru_A0762 0.44 -1.3
896,199 - Rru_A0762 0.47 -0.4
896,225 + Rru_A0762 0.49 +4.6
896,225 + Rru_A0762 0.49 +2.9
896,245 + Rru_A0762 0.50 -0.7
896,246 - Rru_A0762 0.51 -1.3
896,253 - Rru_A0762 0.51 +0.1
896,316 - Rru_A0762 0.55 +2.2
896,316 - Rru_A0762 0.55 +1.1
896,336 + Rru_A0762 0.57 +0.2
896,381 + Rru_A0762 0.60 +0.0
896,443 + Rru_A0762 0.64 +1.5
896,443 + Rru_A0762 0.64 -1.6
896,443 + Rru_A0762 0.64 -0.8
896,443 + Rru_A0762 0.64 +1.1
896,444 - Rru_A0762 0.64 -0.4
896,444 - Rru_A0762 0.64 -0.1
896,444 - Rru_A0762 0.64 +0.1
896,462 + Rru_A0762 0.65 -1.0
896,462 + Rru_A0762 0.65 +1.4
896,462 + Rru_A0762 0.65 +0.1
896,463 - Rru_A0762 0.65 +0.1
896,603 + Rru_A0762 0.75 -0.8
896,603 + Rru_A0762 0.75 -0.3
896,604 - Rru_A0762 0.75 +0.1
896,604 - Rru_A0762 0.75 +0.3
896,625 - Rru_A0762 0.77 +0.1
896,660 + Rru_A0762 0.79 +0.9
896,661 - Rru_A0762 0.79 +0.1
896,717 + Rru_A0762 0.83 +0.6
896,717 + Rru_A0762 0.83 -2.4
896,718 - Rru_A0762 0.83 +1.3
896,718 - Rru_A0762 0.83 +1.4
896,762 + Rru_A0762 0.86 -0.7
897,058 + +5.0
897,058 + +2.1
897,058 + +0.1
897,058 + +5.6
897,058 + -0.8
897,058 + +2.9
897,059 - +0.1
897,059 - +0.1
897,059 - +1.1
897,059 - -0.3
897,061 - +1.6
897,181 + Rru_A0763 0.21 +0.1
897,181 + Rru_A0763 0.21 +0.1
897,181 + Rru_A0763 0.21 -0.6
897,182 - Rru_A0763 0.21 +1.6
897,208 + Rru_A0763 0.23 +0.1
897,209 - Rru_A0763 0.23 +0.1
897,217 + Rru_A0763 0.24 -0.4
897,438 + Rru_A0763 0.45 +1.8
897,438 + Rru_A0763 0.45 +0.8
897,514 + Rru_A0763 0.52 +0.1
897,514 + Rru_A0763 0.52 +2.9
897,515 - Rru_A0763 0.52 -0.9
897,664 + Rru_A0763 0.66 -0.9
897,665 - Rru_A0763 0.66 +0.9
897,665 - Rru_A0763 0.66 +2.3
897,688 + Rru_A0763 0.68 -0.9
897,689 - Rru_A0763 0.68 +1.7
897,760 + Rru_A0763 0.75 -2.1
897,761 - Rru_A0763 0.75 -1.5
897,761 - Rru_A0763 0.75 -1.3
897,794 - Rru_A0763 0.78 +0.8
897,897 + Rru_A0763 0.88 -1.0
897,898 - Rru_A0763 0.88 -1.6
897,898 - Rru_A0763 0.88 +1.8
898,052 + -1.0
898,052 + +0.0
898,052 + -2.0
898,052 + +0.0
898,052 + -2.1
898,053 - +0.6
898,053 - -1.3
898,053 - +6.6
898,053 - +4.1
898,053 - +0.0
898,053 - -1.2
898,165 - Rru_A0764 0.44 -1.4
898,165 - Rru_A0764 0.44 +0.0
898,165 - Rru_A0764 0.44 +0.0
898,165 - Rru_A0764 0.44 +0.0
898,173 + Rru_A0764 0.47 -1.4
898,173 + Rru_A0764 0.47 -1.9
898,173 + Rru_A0764 0.47 +0.0
898,338 + +0.0
898,339 - +0.0
898,374 + -0.1
898,374 + +0.2
898,374 + +0.0
898,374 + -1.0
898,374 + -0.7
898,374 + -0.7
898,375 - -0.8
898,375 - -1.4
898,375 - -1.0
898,375 - -2.3
898,375 - +0.6
898,453 - +3.6
898,453 - -1.0
898,513 - -1.1
898,654 - +0.2
898,654 - +1.6
898,654 - +4.1
898,695 + +0.0
898,696 - +0.0
898,696 - +1.2
898,696 - +2.9
898,696 - +0.0
898,696 - -0.0
898,696 - +0.8
898,736 - -1.3
898,877 - -1.2

Or see this region's nucleotide sequence