Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0760

Experiment: Succinic Acid; Light intensity 18 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0759 and Rru_A0760 are separated by 45 nucleotidesRru_A0760 and Rru_A0761 are separated by 39 nucleotides Rru_A0759: Rru_A0759 - Aldo/keto reductase (NCBI), at 891,666 to 892,574 _A0759 Rru_A0760: Rru_A0760 - hypothetical protein (NCBI), at 892,620 to 893,921 _A0760 Rru_A0761: Rru_A0761 - Radical SAM (NCBI), at 893,961 to 895,472 _A0761 Position (kb) 892 893 894Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5 6at 891.833 kb on + strand, within Rru_A0759at 891.834 kb on - strand, within Rru_A0759at 891.846 kb on + strand, within Rru_A0759at 891.846 kb on + strand, within Rru_A0759at 891.847 kb on - strand, within Rru_A0759at 892.029 kb on + strand, within Rru_A0759at 892.029 kb on + strand, within Rru_A0759at 892.029 kb on + strand, within Rru_A0759at 892.029 kb on + strand, within Rru_A0759at 892.029 kb on + strand, within Rru_A0759at 892.029 kb on + strand, within Rru_A0759at 892.030 kb on - strand, within Rru_A0759at 892.030 kb on - strand, within Rru_A0759at 892.030 kb on - strand, within Rru_A0759at 892.030 kb on - strand, within Rru_A0759at 892.196 kb on - strand, within Rru_A0759at 892.212 kb on - strand, within Rru_A0759at 892.214 kb on + strand, within Rru_A0759at 892.237 kb on + strand, within Rru_A0759at 892.311 kb on + strand, within Rru_A0759at 892.312 kb on - strand, within Rru_A0759at 893.679 kb on + strand, within Rru_A0760at 893.679 kb on + strand, within Rru_A0760at 893.680 kb on - strand, within Rru_A0760at 893.700 kb on + strand, within Rru_A0760at 893.700 kb on + strand, within Rru_A0760at 893.700 kb on + strand, within Rru_A0760at 893.701 kb on - strand, within Rru_A0760at 893.724 kb on + strand, within Rru_A0760at 893.724 kb on + strand, within Rru_A0760at 893.725 kb on - strand, within Rru_A0760at 893.725 kb on - strand, within Rru_A0760at 893.725 kb on - strand, within Rru_A0760at 893.896 kb on - strandat 893.977 kb on + strandat 894.194 kb on + strand, within Rru_A0761at 894.234 kb on + strand, within Rru_A0761at 894.234 kb on + strand, within Rru_A0761at 894.234 kb on + strand, within Rru_A0761at 894.235 kb on - strand, within Rru_A0761at 894.235 kb on - strand, within Rru_A0761at 894.235 kb on - strand, within Rru_A0761at 894.235 kb on - strand, within Rru_A0761at 894.408 kb on + strand, within Rru_A0761at 894.408 kb on + strand, within Rru_A0761at 894.408 kb on + strand, within Rru_A0761at 894.408 kb on + strand, within Rru_A0761at 894.408 kb on + strand, within Rru_A0761at 894.408 kb on + strand, within Rru_A0761at 894.409 kb on - strand, within Rru_A0761at 894.409 kb on - strand, within Rru_A0761at 894.409 kb on - strand, within Rru_A0761at 894.409 kb on - strand, within Rru_A0761at 894.409 kb on - strand, within Rru_A0761at 894.409 kb on - strand, within Rru_A0761at 894.531 kb on + strand, within Rru_A0761at 894.562 kb on - strand, within Rru_A0761at 894.564 kb on - strand, within Rru_A0761at 894.626 kb on + strand, within Rru_A0761at 894.740 kb on + strand, within Rru_A0761at 894.740 kb on + strand, within Rru_A0761at 894.741 kb on - strand, within Rru_A0761at 894.741 kb on - strand, within Rru_A0761at 894.882 kb on - strand, within Rru_A0761at 894.888 kb on + strand, within Rru_A0761at 894.888 kb on + strand, within Rru_A0761at 894.888 kb on + strand, within Rru_A0761at 894.888 kb on + strand, within Rru_A0761at 894.888 kb on + strand, within Rru_A0761at 894.889 kb on - strand, within Rru_A0761at 894.889 kb on - strand, within Rru_A0761at 894.889 kb on - strand, within Rru_A0761at 894.889 kb on - strand, within Rru_A0761at 894.889 kb on - strand, within Rru_A0761at 894.889 kb on - strand, within Rru_A0761at 894.889 kb on - strand, within Rru_A0761at 894.890 kb on + strand, within Rru_A0761at 894.890 kb on + strand, within Rru_A0761at 894.890 kb on + strand, within Rru_A0761at 894.890 kb on + strand, within Rru_A0761at 894.890 kb on + strand, within Rru_A0761at 894.890 kb on + strand, within Rru_A0761at 894.890 kb on + strand, within Rru_A0761at 894.890 kb on + strand, within Rru_A0761at 894.891 kb on - strand, within Rru_A0761at 894.891 kb on - strand, within Rru_A0761at 894.891 kb on - strand, within Rru_A0761

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 18 uM
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891,833 + Rru_A0759 0.18 -0.4
891,834 - Rru_A0759 0.18 +0.6
891,846 + Rru_A0759 0.20 +0.0
891,846 + Rru_A0759 0.20 +1.2
891,847 - Rru_A0759 0.20 +3.1
892,029 + Rru_A0759 0.40 +0.0
892,029 + Rru_A0759 0.40 -1.0
892,029 + Rru_A0759 0.40 +0.0
892,029 + Rru_A0759 0.40 -0.6
892,029 + Rru_A0759 0.40 +0.0
892,029 + Rru_A0759 0.40 -1.0
892,030 - Rru_A0759 0.40 -1.3
892,030 - Rru_A0759 0.40 -0.2
892,030 - Rru_A0759 0.40 +0.7
892,030 - Rru_A0759 0.40 -0.9
892,196 - Rru_A0759 0.58 -0.9
892,212 - Rru_A0759 0.60 +0.0
892,214 + Rru_A0759 0.60 -1.5
892,237 + Rru_A0759 0.63 -1.0
892,311 + Rru_A0759 0.71 -1.5
892,312 - Rru_A0759 0.71 +1.0
893,679 + Rru_A0760 0.81 +0.0
893,679 + Rru_A0760 0.81 +5.7
893,680 - Rru_A0760 0.81 +0.6
893,700 + Rru_A0760 0.83 -0.4
893,700 + Rru_A0760 0.83 -1.0
893,700 + Rru_A0760 0.83 -0.2
893,701 - Rru_A0760 0.83 +0.1
893,724 + Rru_A0760 0.85 +1.8
893,724 + Rru_A0760 0.85 +0.8
893,725 - Rru_A0760 0.85 +4.2
893,725 - Rru_A0760 0.85 -0.1
893,725 - Rru_A0760 0.85 +1.9
893,896 - +0.0
893,977 + -0.1
894,194 + Rru_A0761 0.15 +0.0
894,234 + Rru_A0761 0.18 -0.5
894,234 + Rru_A0761 0.18 -0.2
894,234 + Rru_A0761 0.18 +2.6
894,235 - Rru_A0761 0.18 +0.0
894,235 - Rru_A0761 0.18 +0.0
894,235 - Rru_A0761 0.18 +0.0
894,235 - Rru_A0761 0.18 -0.4
894,408 + Rru_A0761 0.30 -0.4
894,408 + Rru_A0761 0.30 -1.5
894,408 + Rru_A0761 0.30 +0.9
894,408 + Rru_A0761 0.30 +0.0
894,408 + Rru_A0761 0.30 -0.4
894,408 + Rru_A0761 0.30 +0.3
894,409 - Rru_A0761 0.30 -0.3
894,409 - Rru_A0761 0.30 +0.3
894,409 - Rru_A0761 0.30 -0.2
894,409 - Rru_A0761 0.30 -0.9
894,409 - Rru_A0761 0.30 -0.1
894,409 - Rru_A0761 0.30 -0.8
894,531 + Rru_A0761 0.38 +3.4
894,562 - Rru_A0761 0.40 -0.9
894,564 - Rru_A0761 0.40 +0.9
894,626 + Rru_A0761 0.44 -0.3
894,740 + Rru_A0761 0.52 -0.5
894,740 + Rru_A0761 0.52 -0.1
894,741 - Rru_A0761 0.52 +0.0
894,741 - Rru_A0761 0.52 +1.8
894,882 - Rru_A0761 0.61 +5.9
894,888 + Rru_A0761 0.61 -1.6
894,888 + Rru_A0761 0.61 -1.0
894,888 + Rru_A0761 0.61 +5.2
894,888 + Rru_A0761 0.61 +1.1
894,888 + Rru_A0761 0.61 +3.0
894,889 - Rru_A0761 0.61 +0.0
894,889 - Rru_A0761 0.61 -4.0
894,889 - Rru_A0761 0.61 +0.7
894,889 - Rru_A0761 0.61 +0.0
894,889 - Rru_A0761 0.61 -0.3
894,889 - Rru_A0761 0.61 +4.2
894,889 - Rru_A0761 0.61 -0.7
894,890 + Rru_A0761 0.61 +3.1
894,890 + Rru_A0761 0.61 -0.7
894,890 + Rru_A0761 0.61 +1.0
894,890 + Rru_A0761 0.61 -0.0
894,890 + Rru_A0761 0.61 +0.0
894,890 + Rru_A0761 0.61 -2.8
894,890 + Rru_A0761 0.61 +0.0
894,890 + Rru_A0761 0.61 +1.9
894,891 - Rru_A0761 0.62 +2.8
894,891 - Rru_A0761 0.62 +0.0
894,891 - Rru_A0761 0.62 +0.0

Or see this region's nucleotide sequence