Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0749

Experiment: Succinic Acid; Light intensity 18 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0748 and Rru_A0749 are separated by 20 nucleotidesRru_A0749 and Rru_A0750 overlap by 4 nucleotides Rru_A0748: Rru_A0748 - Histidyl-tRNA synthetase, class IIa (NCBI), at 876,421 to 877,668 _A0748 Rru_A0749: Rru_A0749 - Glutamyl-tRNA reductase (NCBI), at 877,689 to 879,014 _A0749 Rru_A0750: Rru_A0750 - Peptide chain release factor 1 (NCBI), at 879,011 to 880,075 _A0750 Position (kb) 877 878 879 880Strain fitness (log2 ratio) -1 0 1 2at 877.666 kb on + strandat 877.666 kb on + strandat 877.666 kb on + strandat 877.667 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 18 uM
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877,666 + +1.0
877,666 + +2.4
877,666 + +0.6
877,667 - +0.0

Or see this region's nucleotide sequence