Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0731

Experiment: Succinic Acid; Light intensity 18 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0729 and Rru_A0730 overlap by 4 nucleotidesRru_A0730 and Rru_A0731 are separated by 166 nucleotidesRru_A0731 and Rru_A0732 are separated by 87 nucleotidesRru_A0732 and Rru_A0733 overlap by 4 nucleotides Rru_A0729: Rru_A0729 - Short-chain dehydrogenase/reductase SDR (NCBI), at 856,840 to 857,619 _A0729 Rru_A0730: Rru_A0730 - hypothetical protein (NCBI), at 857,616 to 858,434 _A0730 Rru_A0731: Rru_A0731 - hypothetical protein (NCBI), at 858,601 to 859,302 _A0731 Rru_A0732: Rru_A0732 - DNA repair protein RadC (NCBI), at 859,390 to 860,121 _A0732 Rru_A0733: Rru_A0733 - Peptidase M24A, methionine aminopeptidase, subfamily 1 (NCBI), at 860,118 to 860,933 _A0733 Position (kb) 858 859 860Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6at 857.711 kb on + strand, within Rru_A0730at 857.711 kb on + strand, within Rru_A0730at 857.712 kb on - strand, within Rru_A0730at 857.712 kb on - strand, within Rru_A0730at 857.712 kb on - strand, within Rru_A0730at 857.712 kb on - strand, within Rru_A0730at 857.712 kb on - strand, within Rru_A0730at 857.712 kb on - strand, within Rru_A0730at 857.713 kb on + strand, within Rru_A0730at 857.713 kb on + strand, within Rru_A0730at 857.713 kb on + strand, within Rru_A0730at 857.713 kb on + strand, within Rru_A0730at 857.714 kb on - strand, within Rru_A0730at 857.886 kb on + strand, within Rru_A0730at 858.023 kb on + strand, within Rru_A0730at 858.024 kb on - strand, within Rru_A0730at 858.042 kb on - strand, within Rru_A0730at 858.042 kb on - strand, within Rru_A0730at 858.128 kb on - strand, within Rru_A0730at 858.156 kb on + strand, within Rru_A0730at 858.156 kb on + strand, within Rru_A0730at 858.156 kb on + strand, within Rru_A0730at 858.156 kb on + strand, within Rru_A0730at 858.157 kb on - strand, within Rru_A0730at 858.157 kb on - strand, within Rru_A0730at 858.157 kb on - strand, within Rru_A0730at 858.157 kb on - strand, within Rru_A0730at 858.157 kb on - strand, within Rru_A0730at 858.268 kb on + strand, within Rru_A0730at 858.268 kb on + strand, within Rru_A0730at 858.268 kb on + strand, within Rru_A0730at 858.268 kb on + strand, within Rru_A0730at 858.269 kb on - strand, within Rru_A0730at 858.601 kb on - strandat 858.659 kb on + strandat 858.659 kb on + strandat 858.660 kb on - strandat 859.300 kb on + strandat 859.300 kb on + strandat 859.300 kb on + strandat 859.301 kb on - strandat 859.333 kb on + strandat 859.333 kb on + strandat 859.333 kb on + strandat 859.333 kb on + strandat 859.333 kb on + strandat 859.334 kb on - strandat 859.373 kb on - strandat 859.392 kb on - strandat 859.392 kb on - strandat 859.443 kb on + strandat 859.443 kb on + strandat 859.443 kb on + strandat 859.443 kb on + strandat 859.444 kb on - strandat 859.444 kb on - strandat 859.444 kb on - strandat 859.444 kb on - strandat 859.444 kb on - strandat 859.444 kb on - strandat 859.555 kb on + strand, within Rru_A0732at 859.555 kb on + strand, within Rru_A0732at 859.556 kb on - strand, within Rru_A0732at 859.556 kb on - strand, within Rru_A0732at 859.557 kb on + strand, within Rru_A0732at 859.558 kb on - strand, within Rru_A0732at 859.558 kb on - strand, within Rru_A0732at 859.558 kb on - strand, within Rru_A0732at 859.731 kb on - strand, within Rru_A0732at 859.969 kb on + strand, within Rru_A0732at 859.970 kb on - strand, within Rru_A0732at 859.970 kb on - strand, within Rru_A0732at 859.970 kb on - strand, within Rru_A0732at 859.970 kb on - strand, within Rru_A0732at 860.048 kb on + strandat 860.048 kb on + strandat 860.049 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 18 uM
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857,711 + Rru_A0730 0.12 +0.2
857,711 + Rru_A0730 0.12 +0.1
857,712 - Rru_A0730 0.12 -2.2
857,712 - Rru_A0730 0.12 +0.1
857,712 - Rru_A0730 0.12 +1.5
857,712 - Rru_A0730 0.12 +5.9
857,712 - Rru_A0730 0.12 +0.1
857,712 - Rru_A0730 0.12 -0.5
857,713 + Rru_A0730 0.12 +0.1
857,713 + Rru_A0730 0.12 -0.6
857,713 + Rru_A0730 0.12 -0.2
857,713 + Rru_A0730 0.12 -0.8
857,714 - Rru_A0730 0.12 -0.1
857,886 + Rru_A0730 0.33 +1.4
858,023 + Rru_A0730 0.50 +1.0
858,024 - Rru_A0730 0.50 -0.4
858,042 - Rru_A0730 0.52 +0.1
858,042 - Rru_A0730 0.52 +2.1
858,128 - Rru_A0730 0.63 +6.0
858,156 + Rru_A0730 0.66 +0.1
858,156 + Rru_A0730 0.66 -0.9
858,156 + Rru_A0730 0.66 +2.4
858,156 + Rru_A0730 0.66 +0.1
858,157 - Rru_A0730 0.66 -0.5
858,157 - Rru_A0730 0.66 +1.1
858,157 - Rru_A0730 0.66 +0.9
858,157 - Rru_A0730 0.66 -0.9
858,157 - Rru_A0730 0.66 +2.1
858,268 + Rru_A0730 0.80 +0.1
858,268 + Rru_A0730 0.80 -0.2
858,268 + Rru_A0730 0.80 +0.1
858,268 + Rru_A0730 0.80 +0.1
858,269 - Rru_A0730 0.80 +0.1
858,601 - +1.1
858,659 + +0.1
858,659 + +2.3
858,660 - +0.1
859,300 + +3.2
859,300 + +0.1
859,300 + +0.1
859,301 - +2.9
859,333 + -0.3
859,333 + +0.4
859,333 + +0.1
859,333 + +0.1
859,333 + +0.5
859,334 - +0.1
859,373 - +0.1
859,392 - +0.2
859,392 - +3.4
859,443 + -1.1
859,443 + +1.0
859,443 + +6.4
859,443 + -0.9
859,444 - -0.9
859,444 - +0.7
859,444 - -1.0
859,444 - +2.6
859,444 - -0.7
859,444 - -0.9
859,555 + Rru_A0732 0.23 +0.1
859,555 + Rru_A0732 0.23 +0.1
859,556 - Rru_A0732 0.23 +6.4
859,556 - Rru_A0732 0.23 +0.1
859,557 + Rru_A0732 0.23 +0.5
859,558 - Rru_A0732 0.23 +2.5
859,558 - Rru_A0732 0.23 +1.4
859,558 - Rru_A0732 0.23 +0.1
859,731 - Rru_A0732 0.47 -1.1
859,969 + Rru_A0732 0.79 -0.4
859,970 - Rru_A0732 0.79 +0.2
859,970 - Rru_A0732 0.79 +1.2
859,970 - Rru_A0732 0.79 +4.7
859,970 - Rru_A0732 0.79 +0.1
860,048 + -0.3
860,048 + -0.1
860,049 - +0.1

Or see this region's nucleotide sequence