Experiment: Succinic Acid; Light intensity 18 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0666 and Rru_A0667 are separated by 26 nucleotides Rru_A0667 and Rru_A0668 are separated by 118 nucleotides Rru_A0668 and Rru_A0669 overlap by 4 nucleotides
Rru_A0666: Rru_A0666 - Multi-sensor Signal Transduction Histidine Kinase (NCBI), at 788,681 to 790,420
_A0666
Rru_A0667: Rru_A0667 - Nicotinate-nucleotide-dimethylbenzimidazolephosphoribosyltransferase (NCBI), at 790,447 to 791,454
_A0667
Rru_A0668: Rru_A0668 - Cobalamin-5-phosphate synthase CobS (NCBI), at 791,573 to 792,358
_A0668
Rru_A0669: Rru_A0669 - Phosphoglycerate/bisphosphoglycerate mutase (NCBI), at 792,355 to 792,993
_A0669
Position (kb) 790
791
792 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6
7 at 789.627 kb on + strand, within Rru_A0666 at 789.930 kb on + strand, within Rru_A0666 at 789.930 kb on + strand, within Rru_A0666 at 789.942 kb on + strand, within Rru_A0666 at 789.967 kb on - strand, within Rru_A0666 at 790.026 kb on + strand, within Rru_A0666 at 790.026 kb on + strand, within Rru_A0666 at 790.026 kb on + strand, within Rru_A0666 at 790.026 kb on + strand, within Rru_A0666 at 790.026 kb on + strand, within Rru_A0666 at 790.026 kb on + strand, within Rru_A0666 at 790.026 kb on + strand, within Rru_A0666 at 790.026 kb on + strand, within Rru_A0666 at 790.026 kb on + strand, within Rru_A0666 at 790.026 kb on + strand, within Rru_A0666 at 790.026 kb on + strand, within Rru_A0666 at 790.026 kb on + strand, within Rru_A0666 at 790.027 kb on - strand, within Rru_A0666 at 790.027 kb on - strand, within Rru_A0666 at 790.027 kb on - strand, within Rru_A0666 at 790.027 kb on - strand, within Rru_A0666 at 790.027 kb on - strand, within Rru_A0666 at 790.027 kb on - strand, within Rru_A0666 at 790.027 kb on - strand, within Rru_A0666 at 790.059 kb on + strand, within Rru_A0666 at 790.060 kb on - strand, within Rru_A0666 at 790.060 kb on - strand, within Rru_A0666 at 790.060 kb on - strand, within Rru_A0666 at 790.448 kb on + strand at 790.449 kb on - strand at 790.449 kb on - strand at 790.449 kb on - strand at 790.495 kb on - strand at 790.925 kb on + strand, within Rru_A0667 at 790.926 kb on - strand, within Rru_A0667 at 791.026 kb on - strand, within Rru_A0667 at 791.029 kb on - strand, within Rru_A0667 at 791.029 kb on - strand, within Rru_A0667 at 791.476 kb on + strand at 791.476 kb on + strand at 791.477 kb on - strand at 791.506 kb on - strand at 791.565 kb on + strand at 791.565 kb on + strand at 791.565 kb on + strand at 791.566 kb on - strand at 791.566 kb on - strand at 791.671 kb on + strand, within Rru_A0668 at 792.233 kb on + strand, within Rru_A0668 at 792.233 kb on + strand, within Rru_A0668 at 792.234 kb on - strand, within Rru_A0668 at 792.234 kb on - strand, within Rru_A0668 at 792.234 kb on - strand, within Rru_A0668
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 18 uM remove 789,627 + Rru_A0666 0.54 -1.0 789,930 + Rru_A0666 0.72 -1.7 789,930 + Rru_A0666 0.72 +0.0 789,942 + Rru_A0666 0.72 +5.6 789,967 - Rru_A0666 0.74 +3.0 790,026 + Rru_A0666 0.77 +3.0 790,026 + Rru_A0666 0.77 -1.0 790,026 + Rru_A0666 0.77 -1.8 790,026 + Rru_A0666 0.77 +0.1 790,026 + Rru_A0666 0.77 +7.3 790,026 + Rru_A0666 0.77 +1.7 790,026 + Rru_A0666 0.77 +0.4 790,026 + Rru_A0666 0.77 +0.0 790,026 + Rru_A0666 0.77 +1.0 790,026 + Rru_A0666 0.77 -1.0 790,026 + Rru_A0666 0.77 -1.1 790,026 + Rru_A0666 0.77 +0.0 790,027 - Rru_A0666 0.77 +0.0 790,027 - Rru_A0666 0.77 -0.7 790,027 - Rru_A0666 0.77 +0.5 790,027 - Rru_A0666 0.77 -0.4 790,027 - Rru_A0666 0.77 +2.1 790,027 - Rru_A0666 0.77 +0.0 790,027 - Rru_A0666 0.77 -0.1 790,059 + Rru_A0666 0.79 +0.0 790,060 - Rru_A0666 0.79 -2.5 790,060 - Rru_A0666 0.79 +0.0 790,060 - Rru_A0666 0.79 -1.5 790,448 + -0.3 790,449 - -1.5 790,449 - +0.0 790,449 - +0.0 790,495 - +4.9 790,925 + Rru_A0667 0.47 -1.7 790,926 - Rru_A0667 0.48 +0.0 791,026 - Rru_A0667 0.57 +0.0 791,029 - Rru_A0667 0.58 -0.4 791,029 - Rru_A0667 0.58 +0.0 791,476 + +0.0 791,476 + +0.0 791,477 - +1.0 791,506 - +0.0 791,565 + +6.4 791,565 + +0.0 791,565 + +0.0 791,566 - -1.4 791,566 - +0.0 791,671 + Rru_A0668 0.12 +0.0 792,233 + Rru_A0668 0.84 -2.7 792,233 + Rru_A0668 0.84 -3.0 792,234 - Rru_A0668 0.84 +1.0 792,234 - Rru_A0668 0.84 +0.0 792,234 - Rru_A0668 0.84 -1.0
Or see this region's nucleotide sequence