Experiment: Succinic Acid; Light intensity 18 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0647 and Rru_A0648 are separated by 52 nucleotides Rru_A0648 and Rru_A0649 are separated by 3 nucleotides Rru_A0649 and Rru_A0650 are separated by 89 nucleotides Rru_A0650 and Rru_A0651 are separated by 256 nucleotides
Rru_A0647: Rru_A0647 - Pyridoxal-5'-phosphate-dependent enzyme, beta subunit (NCBI), at 769,110 to 770,102
_A0647
Rru_A0648: Rru_A0648 - hypothetical protein (NCBI), at 770,155 to 770,793
_A0648
Rru_A0649: Rru_A0649 - hypothetical protein (NCBI), at 770,797 to 771,291
_A0649
Rru_A0650: Rru_A0650 - Cytidine/deoxycytidylate deaminase, zinc-binding region (NCBI), at 771,381 to 771,860
_A0650
Rru_A0651: Rru_A0651 - Glutamine amidotransferase class-I (NCBI), at 772,117 to 772,845
_A0651
Position (kb) 770
771
772 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 770.200 kb on + strand at 770.200 kb on + strand at 770.201 kb on - strand at 770.201 kb on - strand at 770.201 kb on - strand at 770.201 kb on - strand at 770.394 kb on + strand, within Rru_A0648 at 770.394 kb on + strand, within Rru_A0648 at 770.394 kb on + strand, within Rru_A0648 at 770.394 kb on + strand, within Rru_A0648 at 770.394 kb on + strand, within Rru_A0648 at 770.394 kb on + strand, within Rru_A0648 at 770.395 kb on - strand, within Rru_A0648 at 770.395 kb on - strand, within Rru_A0648 at 770.395 kb on - strand, within Rru_A0648 at 770.396 kb on + strand, within Rru_A0648 at 770.396 kb on + strand, within Rru_A0648 at 770.396 kb on + strand, within Rru_A0648 at 770.396 kb on + strand, within Rru_A0648 at 770.397 kb on - strand, within Rru_A0648 at 770.397 kb on - strand, within Rru_A0648 at 770.397 kb on - strand, within Rru_A0648 at 770.397 kb on - strand, within Rru_A0648 at 770.519 kb on + strand, within Rru_A0648 at 770.520 kb on - strand, within Rru_A0648 at 770.520 kb on - strand, within Rru_A0648 at 770.520 kb on - strand, within Rru_A0648 at 770.520 kb on - strand, within Rru_A0648 at 770.520 kb on - strand, within Rru_A0648 at 770.571 kb on - strand, within Rru_A0648 at 770.759 kb on + strand at 770.759 kb on + strand at 770.760 kb on - strand at 770.981 kb on + strand, within Rru_A0649 at 770.981 kb on + strand, within Rru_A0649 at 770.982 kb on - strand, within Rru_A0649 at 770.982 kb on - strand, within Rru_A0649 at 771.042 kb on + strand, within Rru_A0649 at 771.043 kb on - strand, within Rru_A0649 at 771.043 kb on - strand, within Rru_A0649 at 771.074 kb on + strand, within Rru_A0649 at 771.075 kb on - strand, within Rru_A0649 at 771.075 kb on - strand, within Rru_A0649 at 771.376 kb on - strand at 771.376 kb on - strand at 771.981 kb on + strand at 771.982 kb on - strand at 771.990 kb on + strand at 771.990 kb on + strand at 771.990 kb on + strand at 771.991 kb on - strand at 771.991 kb on - strand at 772.031 kb on - strand at 772.031 kb on - strand at 772.041 kb on + strand at 772.042 kb on - strand at 772.189 kb on + strand at 772.190 kb on - strand, within Rru_A0651 at 772.190 kb on - strand, within Rru_A0651 at 772.190 kb on - strand, within Rru_A0651 at 772.190 kb on - strand, within Rru_A0651 at 772.194 kb on + strand, within Rru_A0651 at 772.194 kb on + strand, within Rru_A0651 at 772.195 kb on - strand, within Rru_A0651 at 772.204 kb on - strand, within Rru_A0651 at 772.204 kb on - strand, within Rru_A0651 at 772.208 kb on - strand, within Rru_A0651 at 772.208 kb on - strand, within Rru_A0651 at 772.208 kb on - strand, within Rru_A0651
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 18 uM remove 770,200 + +0.0 770,200 + +1.3 770,201 - +2.8 770,201 - +0.0 770,201 - -0.9 770,201 - +0.2 770,394 + Rru_A0648 0.37 +3.1 770,394 + Rru_A0648 0.37 -0.6 770,394 + Rru_A0648 0.37 -0.4 770,394 + Rru_A0648 0.37 -0.3 770,394 + Rru_A0648 0.37 +0.3 770,394 + Rru_A0648 0.37 -0.5 770,395 - Rru_A0648 0.38 +0.0 770,395 - Rru_A0648 0.38 +0.0 770,395 - Rru_A0648 0.38 -1.8 770,396 + Rru_A0648 0.38 +0.2 770,396 + Rru_A0648 0.38 +0.0 770,396 + Rru_A0648 0.38 +0.6 770,396 + Rru_A0648 0.38 -1.0 770,397 - Rru_A0648 0.38 +0.0 770,397 - Rru_A0648 0.38 +0.0 770,397 - Rru_A0648 0.38 -0.9 770,397 - Rru_A0648 0.38 -3.1 770,519 + Rru_A0648 0.57 +0.0 770,520 - Rru_A0648 0.57 +0.8 770,520 - Rru_A0648 0.57 +1.6 770,520 - Rru_A0648 0.57 -0.6 770,520 - Rru_A0648 0.57 -0.3 770,520 - Rru_A0648 0.57 +0.0 770,571 - Rru_A0648 0.65 +0.0 770,759 + +4.4 770,759 + +0.0 770,760 - -0.4 770,981 + Rru_A0649 0.37 -0.4 770,981 + Rru_A0649 0.37 -1.0 770,982 - Rru_A0649 0.37 +0.0 770,982 - Rru_A0649 0.37 +0.0 771,042 + Rru_A0649 0.49 +0.0 771,043 - Rru_A0649 0.50 -1.0 771,043 - Rru_A0649 0.50 +3.0 771,074 + Rru_A0649 0.56 -2.3 771,075 - Rru_A0649 0.56 +0.0 771,075 - Rru_A0649 0.56 -1.5 771,376 - +0.2 771,376 - +3.5 771,981 + -1.5 771,982 - +0.0 771,990 + +0.0 771,990 + +0.0 771,990 + +0.0 771,991 - +0.0 771,991 - -1.3 772,031 - +2.9 772,031 - -0.4 772,041 + -1.4 772,042 - -1.0 772,189 + -1.5 772,190 - Rru_A0651 0.10 +0.0 772,190 - Rru_A0651 0.10 +0.0 772,190 - Rru_A0651 0.10 -1.0 772,190 - Rru_A0651 0.10 -0.4 772,194 + Rru_A0651 0.11 +0.7 772,194 + Rru_A0651 0.11 -2.3 772,195 - Rru_A0651 0.11 -1.0 772,204 - Rru_A0651 0.12 -1.3 772,204 - Rru_A0651 0.12 -1.8 772,208 - Rru_A0651 0.12 -1.0 772,208 - Rru_A0651 0.12 +0.0 772,208 - Rru_A0651 0.12 -1.4
Or see this region's nucleotide sequence