Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0635

Experiment: Succinic Acid; Light intensity 18 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0634 and Rru_A0635 are separated by 165 nucleotidesRru_A0635 and Rru_A0636 are separated by 3 nucleotidesRru_A0636 and Rru_A0637 are separated by 414 nucleotides Rru_A0634: Rru_A0634 - Cyclic nucleotide-binding domain (cNMP-BD) protein (NCBI), at 754,155 to 755,969 _A0634 Rru_A0635: Rru_A0635 - Na+/solute symporter (NCBI), at 756,135 to 757,814 _A0635 Rru_A0636: Rru_A0636 - Protein of unknown function DUF485 (NCBI), at 757,818 to 758,126 _A0636 Rru_A0637: Rru_A0637 - hypothetical protein (NCBI), at 758,541 to 758,927 _A0637 Position (kb) 756 757 758Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6 7at 755.186 kb on + strand, within Rru_A0634at 755.186 kb on + strand, within Rru_A0634at 755.186 kb on + strand, within Rru_A0634at 755.186 kb on + strand, within Rru_A0634at 755.186 kb on + strand, within Rru_A0634at 755.186 kb on + strand, within Rru_A0634at 755.186 kb on + strand, within Rru_A0634at 755.186 kb on + strand, within Rru_A0634at 755.186 kb on + strand, within Rru_A0634at 755.186 kb on + strand, within Rru_A0634at 755.187 kb on - strand, within Rru_A0634at 755.187 kb on - strand, within Rru_A0634at 755.187 kb on - strand, within Rru_A0634at 755.187 kb on - strand, within Rru_A0634at 755.187 kb on - strand, within Rru_A0634at 755.187 kb on - strand, within Rru_A0634at 755.187 kb on - strand, within Rru_A0634at 755.187 kb on - strand, within Rru_A0634at 755.188 kb on + strand, within Rru_A0634at 755.188 kb on + strand, within Rru_A0634at 755.188 kb on + strand, within Rru_A0634at 755.189 kb on - strand, within Rru_A0634at 755.189 kb on - strand, within Rru_A0634at 755.881 kb on + strandat 755.881 kb on + strandat 755.881 kb on + strandat 755.882 kb on - strandat 755.882 kb on - strandat 756.060 kb on - strandat 756.060 kb on - strandat 756.060 kb on - strandat 756.184 kb on + strandat 756.184 kb on + strandat 756.185 kb on - strandat 756.185 kb on - strandat 756.185 kb on - strandat 756.299 kb on - strandat 756.625 kb on + strand, within Rru_A0635at 756.865 kb on + strand, within Rru_A0635at 756.865 kb on + strand, within Rru_A0635at 756.866 kb on - strand, within Rru_A0635at 756.866 kb on - strand, within Rru_A0635at 756.866 kb on - strand, within Rru_A0635at 756.866 kb on - strand, within Rru_A0635at 756.871 kb on + strand, within Rru_A0635at 756.871 kb on + strand, within Rru_A0635at 756.872 kb on - strand, within Rru_A0635at 756.892 kb on + strand, within Rru_A0635at 756.893 kb on - strand, within Rru_A0635at 756.905 kb on + strand, within Rru_A0635at 756.906 kb on - strand, within Rru_A0635at 757.207 kb on + strand, within Rru_A0635at 757.207 kb on + strand, within Rru_A0635at 757.207 kb on + strand, within Rru_A0635at 757.207 kb on + strand, within Rru_A0635at 757.207 kb on + strand, within Rru_A0635at 757.208 kb on - strand, within Rru_A0635at 757.208 kb on - strand, within Rru_A0635at 757.208 kb on - strand, within Rru_A0635at 757.208 kb on - strand, within Rru_A0635at 757.249 kb on + strand, within Rru_A0635at 757.250 kb on - strand, within Rru_A0635at 757.399 kb on + strand, within Rru_A0635at 757.399 kb on + strand, within Rru_A0635at 757.399 kb on + strand, within Rru_A0635at 757.400 kb on - strand, within Rru_A0635at 757.400 kb on - strand, within Rru_A0635at 757.400 kb on - strand, within Rru_A0635at 757.474 kb on + strand, within Rru_A0635at 757.475 kb on - strand, within Rru_A0635at 757.544 kb on - strand, within Rru_A0635at 757.544 kb on - strand, within Rru_A0635at 757.544 kb on - strand, within Rru_A0635at 757.544 kb on - strand, within Rru_A0635at 757.600 kb on + strand, within Rru_A0635at 757.600 kb on + strand, within Rru_A0635at 757.600 kb on + strand, within Rru_A0635at 757.600 kb on + strand, within Rru_A0635at 757.601 kb on - strand, within Rru_A0635at 757.639 kb on + strand, within Rru_A0635at 757.639 kb on + strand, within Rru_A0635at 757.640 kb on - strand, within Rru_A0635at 757.640 kb on - strand, within Rru_A0635at 757.640 kb on - strand, within Rru_A0635at 757.640 kb on - strand, within Rru_A0635at 757.692 kb on + strandat 757.819 kb on + strandat 757.819 kb on + strandat 757.820 kb on - strandat 757.882 kb on + strand, within Rru_A0636at 757.882 kb on + strand, within Rru_A0636at 757.882 kb on + strand, within Rru_A0636at 757.882 kb on + strand, within Rru_A0636at 757.882 kb on + strand, within Rru_A0636at 757.883 kb on - strand, within Rru_A0636at 757.883 kb on - strand, within Rru_A0636at 757.883 kb on - strand, within Rru_A0636at 757.883 kb on - strand, within Rru_A0636at 757.883 kb on - strand, within Rru_A0636at 757.883 kb on - strand, within Rru_A0636at 758.017 kb on + strand, within Rru_A0636at 758.017 kb on + strand, within Rru_A0636at 758.018 kb on - strand, within Rru_A0636at 758.018 kb on - strand, within Rru_A0636at 758.018 kb on - strand, within Rru_A0636at 758.110 kb on + strandat 758.111 kb on - strandat 758.160 kb on + strandat 758.160 kb on + strandat 758.160 kb on + strandat 758.163 kb on + strandat 758.163 kb on + strandat 758.164 kb on - strandat 758.232 kb on + strandat 758.265 kb on - strandat 758.265 kb on - strandat 758.328 kb on + strandat 758.328 kb on + strandat 758.328 kb on + strandat 758.328 kb on + strandat 758.344 kb on - strandat 758.355 kb on + strandat 758.356 kb on - strandat 758.558 kb on - strandat 758.782 kb on + strand, within Rru_A0637at 758.782 kb on + strand, within Rru_A0637at 758.783 kb on - strand, within Rru_A0637at 758.813 kb on - strand, within Rru_A0637

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 18 uM
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755,186 + Rru_A0634 0.57 -1.5
755,186 + Rru_A0634 0.57 +5.6
755,186 + Rru_A0634 0.57 +0.9
755,186 + Rru_A0634 0.57 +1.0
755,186 + Rru_A0634 0.57 -0.4
755,186 + Rru_A0634 0.57 -1.7
755,186 + Rru_A0634 0.57 +0.1
755,186 + Rru_A0634 0.57 +2.8
755,186 + Rru_A0634 0.57 -2.8
755,186 + Rru_A0634 0.57 -0.6
755,187 - Rru_A0634 0.57 +1.3
755,187 - Rru_A0634 0.57 +0.6
755,187 - Rru_A0634 0.57 -1.8
755,187 - Rru_A0634 0.57 +0.1
755,187 - Rru_A0634 0.57 +0.1
755,187 - Rru_A0634 0.57 -0.7
755,187 - Rru_A0634 0.57 +3.8
755,187 - Rru_A0634 0.57 -0.6
755,188 + Rru_A0634 0.57 +0.1
755,188 + Rru_A0634 0.57 -0.3
755,188 + Rru_A0634 0.57 +0.1
755,189 - Rru_A0634 0.57 -0.9
755,189 - Rru_A0634 0.57 +2.5
755,881 + -1.2
755,881 + +0.1
755,881 + +0.1
755,882 - +0.1
755,882 - -1.5
756,060 - -0.4
756,060 - +0.1
756,060 - +0.9
756,184 + -0.4
756,184 + +0.6
756,185 - +0.1
756,185 - -1.0
756,185 - +0.1
756,299 - +0.1
756,625 + Rru_A0635 0.29 -1.0
756,865 + Rru_A0635 0.43 -1.5
756,865 + Rru_A0635 0.43 -0.4
756,866 - Rru_A0635 0.44 +0.1
756,866 - Rru_A0635 0.44 +3.3
756,866 - Rru_A0635 0.44 +0.7
756,866 - Rru_A0635 0.44 +1.2
756,871 + Rru_A0635 0.44 -0.6
756,871 + Rru_A0635 0.44 +1.0
756,872 - Rru_A0635 0.44 +3.5
756,892 + Rru_A0635 0.45 +2.3
756,893 - Rru_A0635 0.45 -0.2
756,905 + Rru_A0635 0.46 +0.1
756,906 - Rru_A0635 0.46 -0.8
757,207 + Rru_A0635 0.64 +0.1
757,207 + Rru_A0635 0.64 +0.1
757,207 + Rru_A0635 0.64 +0.1
757,207 + Rru_A0635 0.64 -0.6
757,207 + Rru_A0635 0.64 +0.1
757,208 - Rru_A0635 0.64 +0.1
757,208 - Rru_A0635 0.64 +2.3
757,208 - Rru_A0635 0.64 +0.1
757,208 - Rru_A0635 0.64 +0.2
757,249 + Rru_A0635 0.66 +0.3
757,250 - Rru_A0635 0.66 -0.6
757,399 + Rru_A0635 0.75 +2.0
757,399 + Rru_A0635 0.75 -0.5
757,399 + Rru_A0635 0.75 +0.1
757,400 - Rru_A0635 0.75 +0.5
757,400 - Rru_A0635 0.75 -0.5
757,400 - Rru_A0635 0.75 +0.1
757,474 + Rru_A0635 0.80 -0.1
757,475 - Rru_A0635 0.80 +1.8
757,544 - Rru_A0635 0.84 +1.7
757,544 - Rru_A0635 0.84 -0.5
757,544 - Rru_A0635 0.84 +0.4
757,544 - Rru_A0635 0.84 +0.0
757,600 + Rru_A0635 0.87 +0.0
757,600 + Rru_A0635 0.87 +1.2
757,600 + Rru_A0635 0.87 +7.2
757,600 + Rru_A0635 0.87 +2.0
757,601 - Rru_A0635 0.87 -1.0
757,639 + Rru_A0635 0.90 +0.0
757,639 + Rru_A0635 0.90 +0.0
757,640 - Rru_A0635 0.90 -0.3
757,640 - Rru_A0635 0.90 -0.2
757,640 - Rru_A0635 0.90 +6.3
757,640 - Rru_A0635 0.90 -1.2
757,692 + +0.0
757,819 + +0.2
757,819 + +4.1
757,820 - +1.6
757,882 + Rru_A0636 0.21 -0.6
757,882 + Rru_A0636 0.21 -0.8
757,882 + Rru_A0636 0.21 +0.0
757,882 + Rru_A0636 0.21 -0.4
757,882 + Rru_A0636 0.21 +0.0
757,883 - Rru_A0636 0.21 +1.9
757,883 - Rru_A0636 0.21 -1.7
757,883 - Rru_A0636 0.21 +0.0
757,883 - Rru_A0636 0.21 -1.5
757,883 - Rru_A0636 0.21 +2.6
757,883 - Rru_A0636 0.21 -1.1
758,017 + Rru_A0636 0.64 -0.9
758,017 + Rru_A0636 0.64 +0.0
758,018 - Rru_A0636 0.65 +0.4
758,018 - Rru_A0636 0.65 +0.0
758,018 - Rru_A0636 0.65 -0.1
758,110 + +0.0
758,111 - -0.1
758,160 + +0.0
758,160 + -1.0
758,160 + -0.4
758,163 + +0.0
758,163 + +3.5
758,164 - -0.4
758,232 + +0.0
758,265 - -0.5
758,265 - +0.0
758,328 + +0.0
758,328 + +0.0
758,328 + +3.4
758,328 + -1.4
758,344 - +0.0
758,355 + +0.1
758,356 - +2.7
758,558 - +0.0
758,782 + Rru_A0637 0.62 +0.0
758,782 + Rru_A0637 0.62 +0.0
758,783 - Rru_A0637 0.63 +0.0
758,813 - Rru_A0637 0.70 +0.0

Or see this region's nucleotide sequence