Experiment: Succinic Acid; Light intensity 18 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0623 and Rru_A0624 overlap by 4 nucleotides Rru_A0624 and Rru_A0625 are separated by 505 nucleotides
Rru_A0623: Rru_A0623 - Light-independent protochlorophyllide reductase, N subunit (NCBI), at 740,454 to 741,776
_A0623
Rru_A0624: Rru_A0624 - 2-vinyl bacteriochlorophyllide hydratase (NCBI), at 741,773 to 742,354
_A0624
Rru_A0625: Rru_A0625 - hypothetical protein (NCBI), at 742,860 to 743,405
_A0625
Position (kb) 741
742
743 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 741.308 kb on - strand, within Rru_A0623 at 741.855 kb on + strand, within Rru_A0624 at 741.855 kb on + strand, within Rru_A0624 at 741.856 kb on - strand, within Rru_A0624 at 741.856 kb on - strand, within Rru_A0624 at 741.864 kb on + strand, within Rru_A0624 at 741.864 kb on + strand, within Rru_A0624 at 741.864 kb on + strand, within Rru_A0624 at 741.930 kb on + strand, within Rru_A0624 at 741.931 kb on - strand, within Rru_A0624 at 741.931 kb on - strand, within Rru_A0624 at 742.048 kb on + strand, within Rru_A0624 at 742.048 kb on + strand, within Rru_A0624 at 742.049 kb on - strand, within Rru_A0624 at 742.049 kb on - strand, within Rru_A0624 at 742.049 kb on - strand, within Rru_A0624 at 742.049 kb on - strand, within Rru_A0624 at 742.050 kb on + strand, within Rru_A0624 at 742.050 kb on + strand, within Rru_A0624 at 742.051 kb on - strand, within Rru_A0624 at 742.051 kb on - strand, within Rru_A0624 at 742.116 kb on + strand, within Rru_A0624 at 742.131 kb on + strand, within Rru_A0624 at 742.132 kb on - strand, within Rru_A0624 at 742.230 kb on + strand, within Rru_A0624 at 742.230 kb on + strand, within Rru_A0624 at 742.230 kb on + strand, within Rru_A0624 at 742.230 kb on + strand, within Rru_A0624 at 742.231 kb on - strand, within Rru_A0624 at 742.231 kb on - strand, within Rru_A0624 at 742.402 kb on + strand at 742.402 kb on + strand at 742.402 kb on + strand at 742.526 kb on + strand at 742.564 kb on + strand at 742.667 kb on - strand at 742.689 kb on + strand at 742.833 kb on + strand at 742.833 kb on + strand at 742.834 kb on - strand at 742.836 kb on + strand at 742.836 kb on + strand at 742.836 kb on + strand at 742.837 kb on - strand at 742.837 kb on - strand at 742.837 kb on - strand at 742.976 kb on + strand, within Rru_A0625 at 743.196 kb on + strand, within Rru_A0625 at 743.197 kb on - strand, within Rru_A0625 at 743.315 kb on + strand, within Rru_A0625
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 18 uM remove 741,308 - Rru_A0623 0.65 +0.1 741,855 + Rru_A0624 0.14 +0.1 741,855 + Rru_A0624 0.14 +0.1 741,856 - Rru_A0624 0.14 -3.5 741,856 - Rru_A0624 0.14 +0.1 741,864 + Rru_A0624 0.16 +0.1 741,864 + Rru_A0624 0.16 -0.9 741,864 + Rru_A0624 0.16 -0.5 741,930 + Rru_A0624 0.27 +0.1 741,931 - Rru_A0624 0.27 +0.1 741,931 - Rru_A0624 0.27 +0.1 742,048 + Rru_A0624 0.47 -1.9 742,048 + Rru_A0624 0.47 +0.1 742,049 - Rru_A0624 0.47 -0.9 742,049 - Rru_A0624 0.47 +0.1 742,049 - Rru_A0624 0.47 +2.0 742,049 - Rru_A0624 0.47 +0.1 742,050 + Rru_A0624 0.48 +0.1 742,050 + Rru_A0624 0.48 -3.9 742,051 - Rru_A0624 0.48 +0.1 742,051 - Rru_A0624 0.48 -0.9 742,116 + Rru_A0624 0.59 -3.3 742,131 + Rru_A0624 0.62 -3.1 742,132 - Rru_A0624 0.62 -1.9 742,230 + Rru_A0624 0.79 +0.1 742,230 + Rru_A0624 0.79 -4.3 742,230 + Rru_A0624 0.79 -3.5 742,230 + Rru_A0624 0.79 +1.6 742,231 - Rru_A0624 0.79 -1.9 742,231 - Rru_A0624 0.79 -3.4 742,402 + -0.9 742,402 + -2.5 742,402 + -0.7 742,526 + -2.7 742,564 + +0.1 742,667 - +0.1 742,689 + -0.6 742,833 + +2.6 742,833 + +0.1 742,834 - +0.1 742,836 + +4.5 742,836 + -1.7 742,836 + +0.1 742,837 - -1.5 742,837 - +0.1 742,837 - -1.3 742,976 + Rru_A0625 0.21 +0.1 743,196 + Rru_A0625 0.62 +0.8 743,197 - Rru_A0625 0.62 +0.1 743,315 + Rru_A0625 0.83 +5.7
Or see this region's nucleotide sequence