Experiment: Succinic Acid; Light intensity 18 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0618 and Rru_A0619 overlap by 13 nucleotides Rru_A0619 and Rru_A0620 overlap by 1 nucleotides Rru_A0620 and Rru_A0621 are separated by 34 nucleotides
Rru_A0618: Rru_A0618 - PUCC protein (NCBI), at 732,044 to 733,486
_A0618
Rru_A0619: Rru_A0619 - Magnesium protoporphyrin O-methyltransferase (NCBI), at 733,474 to 734,184
_A0619
Rru_A0620: Rru_A0620 - Light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein (NCBI), at 734,184 to 735,071
_A0620
Rru_A0621: Rru_A0621 - Magnesium-chelatase, subunit H (NCBI), at 735,106 to 738,834
_A0621
Position (kb) 734
735
736 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 733.518 kb on - strand at 733.518 kb on - strand at 733.518 kb on - strand at 733.518 kb on - strand at 733.770 kb on - strand, within Rru_A0619 at 733.770 kb on - strand, within Rru_A0619 at 733.914 kb on + strand, within Rru_A0619 at 734.139 kb on - strand at 734.168 kb on + strand at 734.168 kb on + strand at 734.168 kb on + strand at 734.168 kb on + strand at 734.169 kb on - strand at 734.169 kb on - strand at 734.220 kb on + strand at 734.221 kb on - strand at 734.221 kb on - strand at 734.281 kb on + strand, within Rru_A0620 at 734.282 kb on - strand, within Rru_A0620 at 734.476 kb on + strand, within Rru_A0620 at 734.476 kb on + strand, within Rru_A0620 at 734.476 kb on + strand, within Rru_A0620 at 734.476 kb on + strand, within Rru_A0620 at 734.692 kb on + strand, within Rru_A0620 at 734.692 kb on + strand, within Rru_A0620 at 734.752 kb on + strand, within Rru_A0620 at 734.753 kb on - strand, within Rru_A0620 at 734.753 kb on - strand, within Rru_A0620 at 734.753 kb on - strand, within Rru_A0620 at 734.753 kb on - strand, within Rru_A0620 at 734.968 kb on + strand, within Rru_A0620 at 734.968 kb on + strand, within Rru_A0620 at 734.968 kb on + strand, within Rru_A0620 at 734.968 kb on + strand, within Rru_A0620 at 734.969 kb on - strand, within Rru_A0620 at 735.074 kb on + strand at 735.075 kb on - strand at 735.075 kb on - strand at 735.075 kb on - strand at 735.078 kb on + strand at 735.078 kb on + strand at 735.078 kb on + strand at 735.079 kb on - strand at 735.127 kb on + strand at 735.127 kb on + strand at 735.203 kb on + strand at 735.203 kb on + strand at 735.203 kb on + strand at 735.203 kb on + strand at 735.321 kb on + strand at 735.322 kb on - strand at 735.322 kb on - strand at 735.323 kb on + strand at 735.407 kb on + strand at 735.408 kb on - strand at 735.431 kb on + strand at 735.527 kb on + strand, within Rru_A0621 at 735.528 kb on - strand, within Rru_A0621 at 735.528 kb on - strand, within Rru_A0621 at 735.528 kb on - strand, within Rru_A0621 at 735.528 kb on - strand, within Rru_A0621 at 735.528 kb on - strand, within Rru_A0621 at 735.593 kb on + strand, within Rru_A0621 at 735.713 kb on + strand, within Rru_A0621 at 735.806 kb on + strand, within Rru_A0621 at 735.807 kb on - strand, within Rru_A0621 at 735.873 kb on + strand, within Rru_A0621 at 735.873 kb on + strand, within Rru_A0621 at 735.874 kb on - strand, within Rru_A0621 at 735.874 kb on - strand, within Rru_A0621 at 735.874 kb on - strand, within Rru_A0621 at 735.875 kb on + strand, within Rru_A0621 at 735.876 kb on - strand, within Rru_A0621 at 735.876 kb on - strand, within Rru_A0621 at 735.876 kb on - strand, within Rru_A0621 at 735.899 kb on + strand, within Rru_A0621 at 735.899 kb on + strand, within Rru_A0621 at 735.900 kb on - strand, within Rru_A0621 at 735.900 kb on - strand, within Rru_A0621
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 18 uM remove 733,518 - +0.1 733,518 - +1.5 733,518 - +0.1 733,518 - +0.1 733,770 - Rru_A0619 0.42 +0.1 733,770 - Rru_A0619 0.42 +0.1 733,914 + Rru_A0619 0.62 -0.9 734,139 - -3.3 734,168 + -0.9 734,168 + +0.1 734,168 + +0.1 734,168 + -1.5 734,169 - +0.1 734,169 - +0.1 734,220 + +0.1 734,221 - +0.1 734,221 - -2.5 734,281 + Rru_A0620 0.11 -3.2 734,282 - Rru_A0620 0.11 -2.2 734,476 + Rru_A0620 0.33 -4.5 734,476 + Rru_A0620 0.33 +0.1 734,476 + Rru_A0620 0.33 -1.5 734,476 + Rru_A0620 0.33 +0.1 734,692 + Rru_A0620 0.57 -0.5 734,692 + Rru_A0620 0.57 +0.1 734,752 + Rru_A0620 0.64 +0.1 734,753 - Rru_A0620 0.64 -4.5 734,753 - Rru_A0620 0.64 +0.1 734,753 - Rru_A0620 0.64 -0.9 734,753 - Rru_A0620 0.64 +0.1 734,968 + Rru_A0620 0.88 +0.1 734,968 + Rru_A0620 0.88 -3.4 734,968 + Rru_A0620 0.88 +0.1 734,968 + Rru_A0620 0.88 -2.3 734,969 - Rru_A0620 0.88 +0.1 735,074 + -0.9 735,075 - +0.1 735,075 - +0.1 735,075 - +0.1 735,078 + +5.0 735,078 + +0.1 735,078 + +0.1 735,079 - -3.2 735,127 + -2.9 735,127 + +0.1 735,203 + -0.9 735,203 + -0.9 735,203 + +1.3 735,203 + -2.2 735,321 + -1.4 735,322 - +0.1 735,322 - -0.9 735,323 + +0.1 735,407 + +0.1 735,408 - +0.1 735,431 + -1.9 735,527 + Rru_A0621 0.11 +0.1 735,528 - Rru_A0621 0.11 -2.3 735,528 - Rru_A0621 0.11 -0.9 735,528 - Rru_A0621 0.11 +0.1 735,528 - Rru_A0621 0.11 +0.1 735,528 - Rru_A0621 0.11 +0.1 735,593 + Rru_A0621 0.13 +2.6 735,713 + Rru_A0621 0.16 -0.5 735,806 + Rru_A0621 0.19 +0.1 735,807 - Rru_A0621 0.19 +0.1 735,873 + Rru_A0621 0.21 -0.0 735,873 + Rru_A0621 0.21 +0.1 735,874 - Rru_A0621 0.21 +1.6 735,874 - Rru_A0621 0.21 -0.7 735,874 - Rru_A0621 0.21 -3.1 735,875 + Rru_A0621 0.21 +0.1 735,876 - Rru_A0621 0.21 -1.6 735,876 - Rru_A0621 0.21 +0.1 735,876 - Rru_A0621 0.21 +2.6 735,899 + Rru_A0621 0.21 +0.1 735,899 + Rru_A0621 0.21 +0.4 735,900 - Rru_A0621 0.21 -2.9 735,900 - Rru_A0621 0.21 +0.1
Or see this region's nucleotide sequence