Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0588

Experiment: Succinic Acid; Light intensity 18 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0587 and Rru_A0588 are separated by 256 nucleotidesRru_A0588 and Rru_A0589 overlap by 4 nucleotidesRru_A0589 and Rru_A0590 overlap by 1 nucleotides Rru_A0587: Rru_A0587 - Chaperonin Cpn60/TCP-1 (NCBI), at 696,742 to 698,388 _A0587 Rru_A0588: Rru_A0588 - Oligopeptide/dipeptide ABC transporter, ATP-binding protein-like (NCBI), at 698,645 to 699,661 _A0588 Rru_A0589: Rru_A0589 - Oligopeptide/dipeptide ABC transporter, ATP-binding protein-like (NCBI), at 699,658 to 700,650 _A0589 Rru_A0590: Rru_A0590 - Binding-protein-dependent transport systems inner membrane component (NCBI), at 700,650 to 701,558 _A0590 Position (kb) 698 699 700Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 698.386 kb on + strandat 698.387 kb on - strandat 698.523 kb on + strandat 698.571 kb on - strandat 698.646 kb on + strandat 698.889 kb on + strand, within Rru_A0588at 698.890 kb on - strand, within Rru_A0588at 698.890 kb on - strand, within Rru_A0588at 698.910 kb on + strand, within Rru_A0588at 698.911 kb on - strand, within Rru_A0588at 698.911 kb on - strand, within Rru_A0588at 698.911 kb on - strand, within Rru_A0588at 698.911 kb on - strand, within Rru_A0588at 698.911 kb on - strand, within Rru_A0588at 698.952 kb on + strand, within Rru_A0588at 698.952 kb on + strand, within Rru_A0588at 698.952 kb on + strand, within Rru_A0588at 698.952 kb on + strand, within Rru_A0588at 698.952 kb on + strand, within Rru_A0588at 698.953 kb on - strand, within Rru_A0588at 698.977 kb on + strand, within Rru_A0588at 698.993 kb on + strand, within Rru_A0588at 698.993 kb on + strand, within Rru_A0588at 698.993 kb on + strand, within Rru_A0588at 698.994 kb on - strand, within Rru_A0588at 699.689 kb on + strandat 699.689 kb on + strandat 699.689 kb on + strandat 699.690 kb on - strandat 699.690 kb on - strandat 699.893 kb on + strand, within Rru_A0589at 699.893 kb on + strand, within Rru_A0589at 699.894 kb on - strand, within Rru_A0589at 699.894 kb on - strand, within Rru_A0589at 699.894 kb on - strand, within Rru_A0589at 699.912 kb on - strand, within Rru_A0589at 699.912 kb on - strand, within Rru_A0589at 699.912 kb on - strand, within Rru_A0589at 699.912 kb on - strand, within Rru_A0589at 699.956 kb on + strand, within Rru_A0589at 699.956 kb on + strand, within Rru_A0589at 699.956 kb on + strand, within Rru_A0589at 699.957 kb on - strand, within Rru_A0589at 699.957 kb on - strand, within Rru_A0589at 699.957 kb on - strand, within Rru_A0589at 699.957 kb on - strand, within Rru_A0589at 699.958 kb on + strand, within Rru_A0589at 699.958 kb on + strand, within Rru_A0589at 699.958 kb on + strand, within Rru_A0589at 699.958 kb on + strand, within Rru_A0589at 699.958 kb on + strand, within Rru_A0589at 699.959 kb on - strand, within Rru_A0589at 699.959 kb on - strand, within Rru_A0589at 700.191 kb on - strand, within Rru_A0589at 700.411 kb on + strand, within Rru_A0589at 700.411 kb on + strand, within Rru_A0589at 700.412 kb on - strand, within Rru_A0589

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 18 uM
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698,386 + +0.1
698,387 - -0.9
698,523 + -0.1
698,571 - +3.8
698,646 + +1.9
698,889 + Rru_A0588 0.24 -0.0
698,890 - Rru_A0588 0.24 -0.6
698,890 - Rru_A0588 0.24 -1.4
698,910 + Rru_A0588 0.26 +0.1
698,911 - Rru_A0588 0.26 +0.1
698,911 - Rru_A0588 0.26 +5.4
698,911 - Rru_A0588 0.26 +0.1
698,911 - Rru_A0588 0.26 +0.1
698,911 - Rru_A0588 0.26 -0.8
698,952 + Rru_A0588 0.30 +1.1
698,952 + Rru_A0588 0.30 +0.8
698,952 + Rru_A0588 0.30 +0.1
698,952 + Rru_A0588 0.30 +3.0
698,952 + Rru_A0588 0.30 -0.5
698,953 - Rru_A0588 0.30 +0.2
698,977 + Rru_A0588 0.33 +0.1
698,993 + Rru_A0588 0.34 +3.2
698,993 + Rru_A0588 0.34 +0.1
698,993 + Rru_A0588 0.34 +0.1
698,994 - Rru_A0588 0.34 +3.1
699,689 + +0.1
699,689 + +0.7
699,689 + +0.1
699,690 - +0.1
699,690 - +0.1
699,893 + Rru_A0589 0.24 +0.1
699,893 + Rru_A0589 0.24 +1.9
699,894 - Rru_A0589 0.24 +0.1
699,894 - Rru_A0589 0.24 +2.3
699,894 - Rru_A0589 0.24 +0.1
699,912 - Rru_A0589 0.26 +0.1
699,912 - Rru_A0589 0.26 +0.2
699,912 - Rru_A0589 0.26 +3.2
699,912 - Rru_A0589 0.26 -1.7
699,956 + Rru_A0589 0.30 +0.2
699,956 + Rru_A0589 0.30 -1.0
699,956 + Rru_A0589 0.30 -0.9
699,957 - Rru_A0589 0.30 +0.2
699,957 - Rru_A0589 0.30 -2.2
699,957 - Rru_A0589 0.30 +0.1
699,957 - Rru_A0589 0.30 +2.2
699,958 + Rru_A0589 0.30 +4.0
699,958 + Rru_A0589 0.30 -0.7
699,958 + Rru_A0589 0.30 +0.1
699,958 + Rru_A0589 0.30 +0.1
699,958 + Rru_A0589 0.30 +0.1
699,959 - Rru_A0589 0.30 +0.9
699,959 - Rru_A0589 0.30 +0.1
700,191 - Rru_A0589 0.54 +0.1
700,411 + Rru_A0589 0.76 +0.1
700,411 + Rru_A0589 0.76 -0.1
700,412 - Rru_A0589 0.76 +0.1

Or see this region's nucleotide sequence