Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0553

Experiment: Succinic Acid; Light intensity 18 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0551 and Rru_A0552 overlap by 122 nucleotidesRru_A0552 and Rru_A0553 are separated by 264 nucleotidesRru_A0553 and Rru_A0554 are separated by 175 nucleotides Rru_A0551: Rru_A0551 - TPR domain protein (NCBI), at 651,316 to 652,941 _A0551 Rru_A0552: Rru_A0552 - GCN5-related N-acetyltransferase (NCBI), at 652,820 to 653,449 _A0552 Rru_A0553: Rru_A0553 - Response Regulator Receiver Signal Transduction Histidine Kinase (NCBI), at 653,714 to 655,036 _A0553 Rru_A0554: Rru_A0554 - Rh-like protein/ammonium transporter (NCBI), at 655,212 to 656,531 _A0554 Position (kb) 653 654 655 656Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6at 652.761 kb on - strand, within Rru_A0551at 652.761 kb on - strand, within Rru_A0551at 652.821 kb on + strandat 652.821 kb on + strandat 653.246 kb on - strand, within Rru_A0552at 653.246 kb on - strand, within Rru_A0552at 653.246 kb on - strand, within Rru_A0552at 653.246 kb on - strand, within Rru_A0552at 653.246 kb on - strand, within Rru_A0552at 653.246 kb on - strand, within Rru_A0552at 653.246 kb on - strand, within Rru_A0552at 653.247 kb on + strand, within Rru_A0552at 653.247 kb on + strand, within Rru_A0552at 653.247 kb on + strand, within Rru_A0552at 653.247 kb on + strand, within Rru_A0552at 653.247 kb on + strand, within Rru_A0552at 653.247 kb on + strand, within Rru_A0552at 653.247 kb on + strand, within Rru_A0552at 653.247 kb on + strand, within Rru_A0552at 653.247 kb on + strand, within Rru_A0552at 653.248 kb on - strand, within Rru_A0552at 653.248 kb on - strand, within Rru_A0552at 653.485 kb on + strandat 653.485 kb on + strandat 653.485 kb on + strandat 653.486 kb on - strandat 653.486 kb on - strandat 653.537 kb on + strandat 653.537 kb on + strandat 653.568 kb on + strandat 653.568 kb on + strandat 653.569 kb on - strandat 654.319 kb on + strand, within Rru_A0553at 654.319 kb on + strand, within Rru_A0553at 654.319 kb on + strand, within Rru_A0553at 654.319 kb on + strand, within Rru_A0553at 654.319 kb on + strand, within Rru_A0553at 654.319 kb on + strand, within Rru_A0553at 654.319 kb on + strand, within Rru_A0553at 654.319 kb on + strand, within Rru_A0553at 654.320 kb on - strand, within Rru_A0553at 654.320 kb on - strand, within Rru_A0553at 654.320 kb on - strand, within Rru_A0553at 654.321 kb on + strand, within Rru_A0553at 654.322 kb on - strand, within Rru_A0553at 654.555 kb on + strand, within Rru_A0553at 654.556 kb on - strand, within Rru_A0553at 654.556 kb on - strand, within Rru_A0553at 654.556 kb on - strand, within Rru_A0553at 654.621 kb on + strand, within Rru_A0553at 654.637 kb on - strand, within Rru_A0553at 655.084 kb on - strandat 655.179 kb on - strandat 655.213 kb on + strandat 655.687 kb on + strand, within Rru_A0554at 655.687 kb on + strand, within Rru_A0554at 655.688 kb on - strand, within Rru_A0554at 655.688 kb on - strand, within Rru_A0554at 655.688 kb on - strand, within Rru_A0554at 655.688 kb on - strand, within Rru_A0554at 655.805 kb on + strand, within Rru_A0554at 655.806 kb on - strand, within Rru_A0554at 655.806 kb on - strand, within Rru_A0554

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 18 uM
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652,761 - Rru_A0551 0.89 +0.1
652,761 - Rru_A0551 0.89 +0.1
652,821 + -2.5
652,821 + +2.5
653,246 - Rru_A0552 0.68 +0.1
653,246 - Rru_A0552 0.68 -0.9
653,246 - Rru_A0552 0.68 -0.7
653,246 - Rru_A0552 0.68 +0.1
653,246 - Rru_A0552 0.68 -0.6
653,246 - Rru_A0552 0.68 -0.3
653,246 - Rru_A0552 0.68 -0.8
653,247 + Rru_A0552 0.68 +2.0
653,247 + Rru_A0552 0.68 -0.5
653,247 + Rru_A0552 0.68 -1.2
653,247 + Rru_A0552 0.68 +0.3
653,247 + Rru_A0552 0.68 -0.1
653,247 + Rru_A0552 0.68 +0.5
653,247 + Rru_A0552 0.68 +1.5
653,247 + Rru_A0552 0.68 +0.1
653,247 + Rru_A0552 0.68 -0.8
653,248 - Rru_A0552 0.68 +1.0
653,248 - Rru_A0552 0.68 -0.1
653,485 + -0.9
653,485 + +2.9
653,485 + -1.3
653,486 - +2.9
653,486 - +1.3
653,537 + +0.1
653,537 + -0.9
653,568 + +6.1
653,568 + +0.1
653,569 - +1.1
654,319 + Rru_A0553 0.46 -0.6
654,319 + Rru_A0553 0.46 -0.9
654,319 + Rru_A0553 0.46 +0.1
654,319 + Rru_A0553 0.46 +0.1
654,319 + Rru_A0553 0.46 +0.1
654,319 + Rru_A0553 0.46 +0.1
654,319 + Rru_A0553 0.46 -0.0
654,319 + Rru_A0553 0.46 +2.3
654,320 - Rru_A0553 0.46 +6.1
654,320 - Rru_A0553 0.46 -0.9
654,320 - Rru_A0553 0.46 -0.3
654,321 + Rru_A0553 0.46 +0.7
654,322 - Rru_A0553 0.46 +0.7
654,555 + Rru_A0553 0.64 -0.9
654,556 - Rru_A0553 0.64 +0.1
654,556 - Rru_A0553 0.64 -0.0
654,556 - Rru_A0553 0.64 +0.4
654,621 + Rru_A0553 0.69 +0.1
654,637 - Rru_A0553 0.70 +0.1
655,084 - +1.8
655,179 - +0.1
655,213 + +3.9
655,687 + Rru_A0554 0.36 +0.1
655,687 + Rru_A0554 0.36 -0.3
655,688 - Rru_A0554 0.36 +0.1
655,688 - Rru_A0554 0.36 +0.1
655,688 - Rru_A0554 0.36 -0.9
655,688 - Rru_A0554 0.36 +0.1
655,805 + Rru_A0554 0.45 +0.1
655,806 - Rru_A0554 0.45 +0.1
655,806 - Rru_A0554 0.45 +0.1

Or see this region's nucleotide sequence